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| <StructureSection load='3nhq' size='340' side='right'caption='[[3nhq]], [[Resolution|resolution]] 2.55Å' scene=''> | | <StructureSection load='3nhq' size='340' side='right'caption='[[3nhq]], [[Resolution|resolution]] 2.55Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[3nhq]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_aeruginosus"_(schroeter_1872)_trevisan_1885 "bacillus aeruginosus" (schroeter 1872) trevisan 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NHQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3NHQ FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[3nhq]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NHQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3NHQ FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BLA:BILIVERDINE+IX+ALPHA'>BLA</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.55Å</td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3c2w|3c2w]], [[3nop|3nop]], [[3not|3not]], [[3nou|3nou]]</div></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BLA:BILIVERDINE+IX+ALPHA'>BLA</scene></td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">bphP, PA4117 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 "Bacillus aeruginosus" (Schroeter 1872) Trevisan 1885])</td></tr>
| + | |
| <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3nhq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3nhq OCA], [https://pdbe.org/3nhq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3nhq RCSB], [https://www.ebi.ac.uk/pdbsum/3nhq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3nhq ProSAT]</span></td></tr> | | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3nhq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3nhq OCA], [https://pdbe.org/3nhq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3nhq RCSB], [https://www.ebi.ac.uk/pdbsum/3nhq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3nhq ProSAT]</span></td></tr> |
| </table> | | </table> |
| == Function == | | == Function == |
- | [[https://www.uniprot.org/uniprot/BPHY_PSEAE BPHY_PSEAE]] Photoreceptor which exists in two forms that are reversibly interconvertible by light: the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region (By similarity).
| + | [https://www.uniprot.org/uniprot/BPHY_PSEAE BPHY_PSEAE] Photoreceptor which exists in two forms that are reversibly interconvertible by light: the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region (By similarity). |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| </StructureSection> | | </StructureSection> |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Kuk, J]] | + | [[Category: Pseudomonas aeruginosa]] |
- | [[Category: Moffat, K]] | + | [[Category: Kuk J]] |
- | [[Category: Ren, Z]] | + | [[Category: Moffat K]] |
- | [[Category: Yang, X]] | + | [[Category: Ren Z]] |
- | [[Category: Pa]]
| + | [[Category: Yang X]] |
- | [[Category: Photoreceptor]]
| + | |
- | [[Category: Phytochrome]]
| + | |
- | [[Category: Signaling]]
| + | |
- | [[Category: Signaling protein]]
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| Structural highlights
Function
BPHY_PSEAE Photoreceptor which exists in two forms that are reversibly interconvertible by light: the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region (By similarity).
Publication Abstract from PubMed
Light is a fundamental signal that regulates important physiological processes such as development and circadian rhythm in living organisms. Phytochromes form a major family of photoreceptors responsible for red light perception in plants, fungi and bacteria. They undergo reversible photoconversion between red-absorbing (Pr) and far-red-absorbing (Pfr) states, thereby ultimately converting a light signal into a distinct biological signal that mediates subsequent cellular responses. Several structures of microbial phytochromes have been determined in their dark-adapted Pr or Pfr states. However, the structural nature of initial photochemical events has not been characterized by crystallography. Here we report the crystal structures of three intermediates in the photoreaction of Pseudomonas aeruginosa bacteriophytochrome (PaBphP). We used cryotrapping crystallography to capture intermediates, and followed structural changes by scanning the temperature at which the photoreaction proceeded. Light-induced conformational changes in PaBphP originate in ring D of the biliverdin (BV) chromophore, and E-to-Z isomerization about the C(15) = C(16) double bond between rings C and D is the initial photochemical event. As the chromophore relaxes, the twist of the C(15) methine bridge about its two dihedral angles is reversed. Structural changes extend further to rings B and A, and to the surrounding protein regions. These data indicate that absorption of a photon by the Pfr state of PaBphP converts a light signal into a structural signal via twisting and untwisting of the methine bridges in the linear tetrapyrrole within the confined protein cavity.
Temperature-scan cryocrystallography reveals reaction intermediates in bacteriophytochrome.,Yang X, Ren Z, Kuk J, Moffat K Nature. 2011 Oct 16;479(7373):428-32. doi: 10.1038/nature10506. PMID:22002602[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Yang X, Ren Z, Kuk J, Moffat K. Temperature-scan cryocrystallography reveals reaction intermediates in bacteriophytochrome. Nature. 2011 Oct 16;479(7373):428-32. doi: 10.1038/nature10506. PMID:22002602 doi:10.1038/nature10506
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