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| <StructureSection load='3oh0' size='340' side='right'caption='[[3oh0]], [[Resolution|resolution]] 2.15Å' scene=''> | | <StructureSection load='3oh0' size='340' side='right'caption='[[3oh0]], [[Resolution|resolution]] 2.15Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[3oh0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Leima Leima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OH0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3OH0 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[3oh0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Leishmania_major Leishmania major]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OH0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3OH0 FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=UTP:URIDINE+5-TRIPHOSPHATE'>UTP</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.15Å</td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3ogz|3ogz]], [[3oh1|3oh1]], [[3oh2|3oh2]], [[3oh3|3oh3]], [[3oh4|3oh4]]</div></td></tr>
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=UTP:URIDINE+5-TRIPHOSPHATE'>UTP</scene></td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">USP ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=5664 LEIMA])</td></tr> | + | |
- | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/UTP-monosaccharide-1-phosphate_uridylyltransferase UTP-monosaccharide-1-phosphate uridylyltransferase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.64 2.7.7.64] </span></td></tr>
| + | |
| <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3oh0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3oh0 OCA], [https://pdbe.org/3oh0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3oh0 RCSB], [https://www.ebi.ac.uk/pdbsum/3oh0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3oh0 ProSAT]</span></td></tr> | | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3oh0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3oh0 OCA], [https://pdbe.org/3oh0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3oh0 RCSB], [https://www.ebi.ac.uk/pdbsum/3oh0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3oh0 ProSAT]</span></td></tr> |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/D3G6S4_LEIMA D3G6S4_LEIMA] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| </StructureSection> | | </StructureSection> |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Leima]] | + | [[Category: Leishmania major]] |
- | [[Category: UTP-monosaccharide-1-phosphate uridylyltransferase]]
| + | [[Category: Damerow S]] |
- | [[Category: Damerow, S]] | + | [[Category: Dickmanns A]] |
- | [[Category: Dickmanns, A]] | + | [[Category: Ficner R]] |
- | [[Category: Ficner, R]] | + | [[Category: Lamerz A]] |
- | [[Category: Lamerz, A]] | + | [[Category: Neumann P]] |
- | [[Category: Neumann, P]] | + | [[Category: Routier F]] |
- | [[Category: Routier, F]] | + | [[Category: Schulz E-C]] |
- | [[Category: Schulz, E C]] | + | |
- | [[Category: Left handed beta helix]]
| + | |
- | [[Category: Rossmann fold]]
| + | |
- | [[Category: Transferase]]
| + | |
- | [[Category: Udp sugar pyrophosphorylase]]
| + | |
| Structural highlights
Function
D3G6S4_LEIMA
Publication Abstract from PubMed
Nucleotide sugars and the enzymes that are responsible for their synthesis are indispensable for the production of complex carbohydrates and, thus, for elaboration of a protective cellular coat for many organisms such as the protozoan parasite Leishmania. These activated sugars are synthesized de novo or derived from salvaged monosaccharides. In addition to UDP-glucose (UDP-Glc) pyrophosphorylase, which catalyzes the formation of UDP-Glc from substrates UTP and glucose-1-phosphate, Leishmania major and plants express a UDP-sugar pyrophosphorylase (USP) that exhibits broad substrate specificity in vitro. The enzyme, likely involved in monosaccharide salvage, preferentially generates UDP-Glc and UDP-galactose, but it may also activate other hexose- or pentose-1-phosphates such as galacturonic acid-1-phosphate or arabinose-1-phosphate. In order to gain insight into structural features governing the differences in substrate specificity, we determined the crystal structure of the L. major USP in the APO-, UTP-, and UDP-sugar-bound conformations. The overall tripartite structure of USP exhibits a significant structural homology to other nucleotidyldiphosphate-glucose pyrophosphorylases. The obtained USP structures reveal the structural rearrangements occurring during the stepwise binding process of the substrates. Moreover, the different product complexes explain the broad substrate specificity of USP, which is enabled by structural changes in the sugar binding region of the active site.
Structural Basis for the Broad Substrate Range of the UDP-Sugar Pyrophosphorylase from Leishmania major.,Dickmanns A, Damerow S, Neumann P, Schulz EC, Lamerz AC, Routier FH, Ficner R J Mol Biol. 2010 Nov 10. PMID:21073876[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Dickmanns A, Damerow S, Neumann P, Schulz EC, Lamerz AC, Routier FH, Ficner R. Structural Basis for the Broad Substrate Range of the UDP-Sugar Pyrophosphorylase from Leishmania major. J Mol Biol. 2010 Nov 10. PMID:21073876 doi:10.1016/j.jmb.2010.10.057
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