This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3ops

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:43, 6 September 2023) (edit) (undo)
 
Line 1: Line 1:
==Crystal structure of mandelate racemase/muconate lactonizing protein FROM GEOBACILLUS SP. Y412MC10 complexed with magnesium/tartrate==
==Crystal structure of mandelate racemase/muconate lactonizing protein FROM GEOBACILLUS SP. Y412MC10 complexed with magnesium/tartrate==
-
<StructureSection load='3ops' size='340' side='right' caption='[[3ops]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
+
<StructureSection load='3ops' size='340' side='right'caption='[[3ops]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3ops]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Geos4 Geos4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OPS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3OPS FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3ops]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Paenibacillus_sp._Y412MC10 Paenibacillus sp. Y412MC10]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OPS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3OPS FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=TAR:D(-)-TARTARIC+ACID'>TAR</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=TAR:D(-)-TARTARIC+ACID'>TAR</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3n4f|3n4f]]</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ops FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ops OCA], [https://pdbe.org/3ops PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ops RCSB], [https://www.ebi.ac.uk/pdbsum/3ops PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ops ProSAT]</span></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">192811615, GYMC10_3367 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=481743 GEOS4])</td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ops FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ops OCA], [http://pdbe.org/3ops PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3ops RCSB], [http://www.ebi.ac.uk/pdbsum/3ops PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3ops ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/D3EID5_GEOS4 D3EID5_GEOS4]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/op/3ops_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/op/3ops_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 23: Line 23:
==See Also==
==See Also==
*[[Mandelate racemase|Mandelate racemase]]
*[[Mandelate racemase|Mandelate racemase]]
 +
*[[Mandelate racemase/muconate lactonizing enzyme 3D structures|Mandelate racemase/muconate lactonizing enzyme 3D structures]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Geos4]]
+
[[Category: Large Structures]]
-
[[Category: Almo, S C]]
+
[[Category: Paenibacillus sp. Y412MC10]]
-
[[Category: Burley, S K]]
+
[[Category: Almo SC]]
-
[[Category: Malashkevich, V N]]
+
[[Category: Burley SK]]
-
[[Category: Structural genomic]]
+
[[Category: Malashkevich VN]]
-
[[Category: Patskovsky, Y]]
+
[[Category: Patskovsky Y]]
-
[[Category: Ramagopal, U]]
+
[[Category: Ramagopal U]]
-
[[Category: Sauder, J M]]
+
[[Category: Sauder JM]]
-
[[Category: Toro, R]]
+
[[Category: Toro R]]
-
[[Category: Crystal structure]]
+
-
[[Category: Isomerase]]
+
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
+
-
[[Category: PSI, Protein structure initiative]]
+
-
[[Category: Racemase]]
+

Current revision

Crystal structure of mandelate racemase/muconate lactonizing protein FROM GEOBACILLUS SP. Y412MC10 complexed with magnesium/tartrate

PDB ID 3ops

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools