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| | <StructureSection load='3p4l' size='340' side='right'caption='[[3p4l]], [[Resolution|resolution]] 1.80Å' scene=''> | | <StructureSection load='3p4l' size='340' side='right'caption='[[3p4l]], [[Resolution|resolution]] 1.80Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[3p4l]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3P4L OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3P4L FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[3p4l]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3P4L OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3P4L FirstGlance]. <br> |
| - | </td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1x5j|1x5j]], [[1x5k|1x5k]]</div></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8Å</td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">NEO1, IGDCC2, NGN ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
| + | |
| | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3p4l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3p4l OCA], [https://pdbe.org/3p4l PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3p4l RCSB], [https://www.ebi.ac.uk/pdbsum/3p4l PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3p4l ProSAT]</span></td></tr> | | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3p4l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3p4l OCA], [https://pdbe.org/3p4l PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3p4l RCSB], [https://www.ebi.ac.uk/pdbsum/3p4l PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3p4l ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | == Function == | | == Function == |
| - | [[https://www.uniprot.org/uniprot/NEO1_HUMAN NEO1_HUMAN]] May be involved as a regulatory protein in the transition of undifferentiated proliferating cells to their differentiated state. May also function as a cell adhesion molecule in a broad spectrum of embryonic and adult tissues.
| + | [https://www.uniprot.org/uniprot/NEO1_HUMAN NEO1_HUMAN] May be involved as a regulatory protein in the transition of undifferentiated proliferating cells to their differentiated state. May also function as a cell adhesion molecule in a broad spectrum of embryonic and adult tissues. |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Human]] | + | [[Category: Homo sapiens]] |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Bjorkman, P J]] | + | [[Category: Bjorkman PJ]] |
| - | [[Category: West, A P]] | + | [[Category: West Jr AP]] |
| - | [[Category: Yang, F]] | + | [[Category: Yang F]] |
| - | [[Category: Cell adhesion]]
| + | |
| - | [[Category: Fibronectin type iii]]
| + | |
| - | [[Category: Fniii domain]]
| + | |
| - | [[Category: Hemojuvelin receptor]]
| + | |
| - | [[Category: Iron homeostasis]]
| + | |
| Structural highlights
Function
NEO1_HUMAN May be involved as a regulatory protein in the transition of undifferentiated proliferating cells to their differentiated state. May also function as a cell adhesion molecule in a broad spectrum of embryonic and adult tissues.
Publication Abstract from PubMed
Neogenin is a type I transmembrane glycoprotein with a large ectodomain containing tandem immunoglobulin-like and fibronectin type III (FNIII) domains. Closely related to the tumor suppressor gene DCC, neogenin functions in critical biological processes through binding to various ligands, including netrin, repulsive guidance molecules, and the iron regulatory protein hemojuvelin. We previously reported that neogenin binds to hemojuvelin through its membrane-proximal fifth and sixth FNIII domains (FN5-6), with domain 6 (FN6) contributing the majority of critical binding interactions. Here we present the crystal structure of FN5-6, the hemojuvelin-binding fragment of human neogenin, at 1.8A. The two FNIII domains are orientated nearly linearly, a domain arrangement most similar to that of a tandem FNIII-containing fragment within the cytoplasmic tail of the beta4 integrin. By mapping surface-exposed residues that differ between neogenin FN5-6 and the comparable domains from DCC, which does not bind hemojuvelin, we identified a potential hemojuvelin-binding site on neogenin FN6. Neogenin FN5, which does not bind hemojuvelin in isolation, exhibits a highly electropositive surface, which may be involved in interactions with negatively-charged polysaccharides or phospholipids in the membrane bilayer. The neogenin FN5-6 structure can be used to facilitate a molecular understanding of neogenin's interaction with hemojuvelin to regulate iron homeostasis and with hemojuvelin-related repulsive guidance molecules to mediate axon guidance.
Crystal structure of a hemojuvelin-binding fragment of neogenin at 1.8A,Yang F, West AP Jr, Bjorkman PJ J Struct Biol. 2010 Oct 28. PMID:20971194[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Yang F, West AP Jr, Bjorkman PJ. Crystal structure of a hemojuvelin-binding fragment of neogenin at 1.8A J Struct Biol. 2010 Oct 28. PMID:20971194 doi:10.1016/j.jsb.2010.10.005
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