7e6y
From Proteopedia
(Difference between revisions)
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==Time-resolved serial femtosecond crystallography reveals early structural changes in channelrhodopsin: 1 microsecond structure== | ==Time-resolved serial femtosecond crystallography reveals early structural changes in channelrhodopsin: 1 microsecond structure== | ||
- | <StructureSection load='7e6y' size='340' side='right'caption='[[7e6y]]' scene=''> | + | <StructureSection load='7e6y' size='340' side='right'caption='[[7e6y]], [[Resolution|resolution]] 2.50Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7E6Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7E6Y FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[7e6y]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Chlamydomonas_reinhardtii Chlamydomonas reinhardtii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7E6Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7E6Y FirstGlance]. <br> |
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7e6y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7e6y OCA], [https://pdbe.org/7e6y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7e6y RCSB], [https://www.ebi.ac.uk/pdbsum/7e6y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7e6y ProSAT]</span></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5Å</td></tr> |
+ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=OLC:(2R)-2,3-DIHYDROXYPROPYL+(9Z)-OCTADEC-9-ENOATE'>OLC</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7e6y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7e6y OCA], [https://pdbe.org/7e6y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7e6y RCSB], [https://www.ebi.ac.uk/pdbsum/7e6y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7e6y ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/Q8RUT8_CHLRE Q8RUT8_CHLRE] [https://www.uniprot.org/uniprot/Q93WP2_CHLRE Q93WP2_CHLRE] | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Channelrhodopsins (ChRs) are microbial light-gated ion channels utilized in optogenetics to control neural activity with light . Light absorption causes retinal chromophore isomerization and subsequent protein conformational changes visualized as optically distinguished intermediates, coupled with channel opening and closing. However, the detailed molecular events underlying channel gating remain unknown. We performed time-resolved serial femtosecond crystallographic analyses of ChR by using an X-ray free electron laser, which revealed conformational changes following photoactivation. The isomerized retinal adopts a twisted conformation and shifts toward the putative internal proton donor residues, consequently inducing an outward shift of TM3, as well as a local deformation in TM7. These early conformational changes in the pore-forming helices should be the triggers that lead to opening of the ion conducting pore. | ||
+ | |||
+ | Time-resolved serial femtosecond crystallography reveals early structural changes in channelrhodopsin.,Oda K, Nomura T, Nakane T, Yamashita K, Inoue K, Ito S, Vierock J, Hirata K, Maturana AD, Katayama K, Ikuta T, Ishigami I, Izume T, Umeda R, Eguma R, Oishi S, Kasuya G, Kato T, Kusakizako T, Shihoya W, Shimada H, Takatsuji T, Takemoto M, Taniguchi R, Tomita A, Nakamura R, Fukuda M, Miyauchi H, Lee Y, Nango E, Tanaka R, Tanaka T, Sugahara M, Kimura T, Shimamura T, Fujiwara T, Yamanaka Y, Owada S, Joti Y, Tono K, Ishitani R, Hayashi S, Kandori H, Hegemann P, Iwata S, Kubo M, Nishizawa T, Nureki O Elife. 2021 Mar 23;10. pii: 62389. doi: 10.7554/eLife.62389. PMID:33752801<ref>PMID:33752801</ref> | ||
+ | |||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 7e6y" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
+ | [[Category: Chlamydomonas reinhardtii]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
[[Category: Eguma R]] | [[Category: Eguma R]] |
Revision as of 10:06, 6 September 2023
Time-resolved serial femtosecond crystallography reveals early structural changes in channelrhodopsin: 1 microsecond structure
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Categories: Chlamydomonas reinhardtii | Large Structures | Eguma R | Fujiwara T | Fukuda M | Hayashi S | Hegemann P | Hirata K | Ikuta T | Inoue K | Ishigami I | Ishitani R | Ito S | Iwata S | Izume T | Joti Y | Kandori H | Kasuya G | Katayama K | Kato T | Kimura T | Kubo M | Kusakizako T | Lee Y | Maturana AD | Miyauchi H | Nakamura R | Nakane T | Nango E | Nishizawa T | Nomura T | Nureki O | Oda K | Oishi S | Owada S | Shihoya W | Shimada H | Shimamura T | Sugahara M | Takatsuji T | Takemoto M | Tanaka R | Tanaka T | Taniguchi R | Tomita A | Tono K | Umeda R | Vierock J | Yamanaka Y | Yamashita K