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5izd

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Current revision (10:39, 6 September 2023) (edit) (undo)
 
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<StructureSection load='5izd' size='340' side='right'caption='[[5izd]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
<StructureSection load='5izd' size='340' side='right'caption='[[5izd]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5izd]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/"thermoplasma_acidophila"_(sic)_darland_et_al._1970 "thermoplasma acidophila" (sic) darland et al. 1970]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5IZD OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5IZD FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5izd]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermoplasma_acidophilum Thermoplasma acidophilum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5IZD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5IZD FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.05&#8491;</td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CSD:3-SULFINOALANINE'>CSD</scene></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CSD:3-SULFINOALANINE'>CSD</scene>, <scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Ta0809 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2303 "Thermoplasma acidophila" (sic) Darland et al. 1970])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5izd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5izd OCA], [https://pdbe.org/5izd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5izd RCSB], [https://www.ebi.ac.uk/pdbsum/5izd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5izd ProSAT]</span></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/D-glyceraldehyde_dehydrogenase_(NADP(+)) D-glyceraldehyde dehydrogenase (NADP(+))], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.2.1.89 1.2.1.89] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5izd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5izd OCA], [http://pdbe.org/5izd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5izd RCSB], [http://www.ebi.ac.uk/pdbsum/5izd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5izd ProSAT]</span></td></tr>
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</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/GADH_THEAC GADH_THEAC]] NADP-dependent dehydrogenase of the nED (non-phosphorylated Entner-Doudoroff) pathway with highest activity towards glyceraldehydes (e.g. D,L-glyceraldehyde and D-glyceraldehyde), to a lesser extent towards D,L-glyceraldehyde-3-phosphate and glycolaldehyde, but no activity towards aliphatic or aromatic aldehydes.<ref>PMID:16458304</ref> <ref>PMID:16566751</ref>
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[https://www.uniprot.org/uniprot/GADH_THEAC GADH_THEAC] NADP-dependent dehydrogenase of the nED (non-phosphorylated Entner-Doudoroff) pathway with highest activity towards glyceraldehydes (e.g. D,L-glyceraldehyde and D-glyceraldehyde), to a lesser extent towards D,L-glyceraldehyde-3-phosphate and glycolaldehyde, but no activity towards aliphatic or aromatic aldehydes.<ref>PMID:16458304</ref> <ref>PMID:16566751</ref>
== References ==
== References ==
<references/>
<references/>
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</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Iermak, I]]
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[[Category: Thermoplasma acidophilum]]
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[[Category: Mesters, J R]]
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[[Category: Iermak I]]
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[[Category: Smatanova, I Kuta]]
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[[Category: Kuta Smatanova I]]
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[[Category: Nadp-dependent dehydrogenase]]
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[[Category: Mesters JR]]
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[[Category: Oxidoreductase]]
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Current revision

Wild-type glyceraldehyde dehydrogenase from Thermoplasma acidophilum in complex with NADP

PDB ID 5izd

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