User:Eric Martz/Sandbox 19

1. The PDB file generated by PACUPP was uploaded to Proteopedia: Image:2j1n cavities fine small 3 5 20 24.pdb.

2. Within PACUPP, the initial scene was modified (using PACUPP Peel and Extend commands), and then a state script was saved (write 2j1n.spt).

3. Using a plain text editor, load command near the top of the state script was commented out by putting # before load.

4. The uploaded PACUPP PDB file was loaded into the present page using the SAT.

5. While in the SAT, the saved state script 2j1n.spt was dropped into JSmol.

6. The scene was saved, getting .

7. I loaded the previous scene in the SAT and manually issued the Jmol commands select protein; cartoon off; producing . I did nothing to remove PACUPP's echo text that was at the top of scene #1. Apparently Proteopedia's SAT removed it automatically.