8okv

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Current revision (14:47, 20 September 2023) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 8okv is ON HOLD until Paper Publication
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==lipoprotein BT2095 from Bacteroides thetaiotamicron bound to cyanocobalamin CnCbl==
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<StructureSection load='8okv' size='340' side='right'caption='[[8okv]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[8okv]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacteroides_thetaiotaomicron_VPI-5482 Bacteroides thetaiotaomicron VPI-5482]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8OKV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8OKV FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CNC:CO-CYANOCOBALAMIN'>CNC</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8okv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8okv OCA], [https://pdbe.org/8okv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8okv RCSB], [https://www.ebi.ac.uk/pdbsum/8okv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8okv ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q8A5Z1_BACTN Q8A5Z1_BACTN]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Vitamin B(12) (cobalamin) is required for most human gut microbes, many of which are dependent on scavenging to obtain this vitamin. Since bacterial densities in the gut are extremely high, competition for this keystone micronutrient is severe. Contrasting with Enterobacteria, members of the dominant genus Bacteroides often encode several BtuB vitamin B(12) outer membrane transporters together with a conserved array of surface-exposed B(12)-binding lipoproteins. Here we show that the BtuB transporters from Bacteroides thetaiotaomicron form stable, pedal bin-like complexes with surface-exposed BtuG lipoprotein lids, which bind B(12) with high affinities. Closing of the BtuG lid following B(12) capture causes destabilisation of the bound B(12) by a conserved BtuB extracellular loop, causing translocation of the vitamin to BtuB and subsequent transport. We propose that TonB-dependent, lipoprotein-assisted small molecule uptake is a general feature of Bacteroides spp. that is important for the success of this genus in colonising the human gut.
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Authors: Javier Abellon-Ruiz, J., van den Berg, B., Jana, K., Kleinekathofer, U., Silale, A., Frey, A.M., Basle, A., Trost, M.
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BtuB TonB-dependent transporters and BtuG surface lipoproteins form stable complexes for vitamin B(12) uptake in gut Bacteroides.,Abellon-Ruiz J, Jana K, Silale A, Frey AM, Basle A, Trost M, Kleinekathofer U, van den Berg B Nat Commun. 2023 Aug 5;14(1):4714. doi: 10.1038/s41467-023-40427-2. PMID:37543597<ref>PMID:37543597</ref>
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Description: lipoprotein BT2095 from Bacteroides thetaiotamicron bound to cyanocobalamin CnCbl
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Jana, K]]
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<div class="pdbe-citations 8okv" style="background-color:#fffaf0;"></div>
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[[Category: Silale, A]]
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== References ==
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[[Category: Van Den Berg, B]]
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<references/>
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[[Category: Javier Abellon-Ruiz, J]]
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__TOC__
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[[Category: Frey, A.M]]
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</StructureSection>
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[[Category: Basle, A]]
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[[Category: Bacteroides thetaiotaomicron VPI-5482]]
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[[Category: Trost, M]]
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[[Category: Large Structures]]
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[[Category: Kleinekathofer, U]]
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[[Category: Basle A]]
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[[Category: Frey AM]]
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[[Category: Jana K]]
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[[Category: Javier Abellon-Ruiz J]]
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[[Category: Kleinekathofer U]]
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[[Category: Silale A]]
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[[Category: Trost M]]
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[[Category: Van den Berg B]]

Current revision

lipoprotein BT2095 from Bacteroides thetaiotamicron bound to cyanocobalamin CnCbl

PDB ID 8okv

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