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| | <StructureSection load='5jnp' size='340' side='right'caption='[[5jnp]], [[Resolution|resolution]] 2.40Å' scene=''> | | <StructureSection load='5jnp' size='340' side='right'caption='[[5jnp]], [[Resolution|resolution]] 2.40Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[5jnp]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Japanese_rice Japanese rice]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JNP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5JNP FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5jnp]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Oryza_sativa_Japonica_Group Oryza sativa Japonica Group]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JNP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5JNP FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FLC:CITRATE+ANION'>FLC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.404Å</td></tr> |
| - | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FLC:CITRATE+ANION'>FLC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CESA8, Os07g0208500, LOC_Os07g10770, OJ1136_A05.10, OJ1559_F09.120, OsJ_022567 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=39947 Japanese rice])</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5jnp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jnp OCA], [https://pdbe.org/5jnp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5jnp RCSB], [https://www.ebi.ac.uk/pdbsum/5jnp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5jnp ProSAT]</span></td></tr> |
| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cellulose_synthase_(UDP-forming) Cellulose synthase (UDP-forming)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.12 2.4.1.12] </span></td></tr>
| + | |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5jnp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jnp OCA], [http://pdbe.org/5jnp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jnp RCSB], [http://www.ebi.ac.uk/pdbsum/5jnp PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jnp ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | == Function == | | == Function == |
| - | [[http://www.uniprot.org/uniprot/CESA8_ORYSJ CESA8_ORYSJ]] Probable catalytic subunit of cellulose synthase terminal complexes ('rosettes'), required for beta-1,4-glucan microfibril crystallization, a major mechanism of the cell wall formation. | + | [https://www.uniprot.org/uniprot/CESA8_ORYSJ CESA8_ORYSJ] Probable catalytic subunit of cellulose synthase terminal complexes ('rosettes'), required for beta-1,4-glucan microfibril crystallization, a major mechanism of the cell wall formation. |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Japanese rice]] | |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Badger, J]] | + | [[Category: Oryza sativa Japonica Group]] |
| - | [[Category: Carpita, N C]] | + | [[Category: Badger J]] |
| - | [[Category: Makowski, L]] | + | [[Category: Carpita NC]] |
| - | [[Category: Olek, A T]] | + | [[Category: Makowski L]] |
| - | [[Category: Rushton, P S]] | + | [[Category: Olek AT]] |
| - | [[Category: Stauffacher, C V]] | + | [[Category: Rushton PS]] |
| - | [[Category: Steussy, C N]] | + | [[Category: Stauffacher CV]] |
| - | [[Category: Cellulose synthase]]
| + | [[Category: Steussy CN]] |
| - | [[Category: Coiled-coil]]
| + | |
| - | [[Category: Glycosyltranferase]]
| + | |
| - | [[Category: Transferase]]
| + | |
| Structural highlights
Function
CESA8_ORYSJ Probable catalytic subunit of cellulose synthase terminal complexes ('rosettes'), required for beta-1,4-glucan microfibril crystallization, a major mechanism of the cell wall formation.
Publication Abstract from PubMed
The crystallographic structure of a rice cellulose synthase, OsCesA8, plant conserved region (P-CR), one of two unique domains in the catalytic domain of plant CesAs, was solved to 2.4A resolution. Two anti-parallel alpha-helices form a coiled-coil domain linked by a large extended connector loop containing a conserved trio of aromatic residues. The P-CR structure was fit into a molecular envelope for the P-CR domain derived from small-angle X-ray solution scattering data (SAXS). The P-CR structure and molecular envelope, combined with a homology-based chain trace of the CesA8 catalytic core, were modeled into a previously determined CesA8 SAXS molecular envelope to produce a detailed topological model of the CesA8 catalytic domain (CatD). The predicted position for the P-CR domain from the molecular docking models places the P-CR connecting loop into a hydrophobic pocket of the catalytic core, with the coiled-coil aligned near the entrance of the substrate UDP-Glc into the active site. In this configuration the P-CR coiled coil alone is unlikely to regulate substrate access to the active site but it could interact with other domains of CesA, accessory proteins, or other CesA CatDs to control substrate delivery.
Rice Cellulose SynthaseA8 Plant-Conserved Region is a coiled-coil at the catalytic core entrance.,Rushton PS, Olek AT, Makowski L, Badger J, Steussy CN, Carpita NC, Stauffacher CV Plant Physiol. 2016 Nov 22. pii: pp.00739.2016. PMID:27879387[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Rushton PS, Olek AT, Makowski L, Badger J, Steussy CN, Carpita NC, Stauffacher CV. Rice Cellulose SynthaseA8 Plant-Conserved Region is a coiled-coil at the catalytic core entrance. Plant Physiol. 2016 Nov 22. pii: pp.00739.2016. PMID:27879387 doi:http://dx.doi.org/10.1104/pp.16.00739
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