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| <StructureSection load='5jr9' size='340' side='right'caption='[[5jr9]], [[Resolution|resolution]] 2.40Å' scene=''> | | <StructureSection load='5jr9' size='340' side='right'caption='[[5jr9]], [[Resolution|resolution]] 2.40Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[5jr9]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Microarchaeum_sp._kin4-m Microarchaeum sp. kin4-m]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JR9 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5JR9 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5jr9]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Nanoarchaeum_equitans_Kin4-M Nanoarchaeum equitans Kin4-M]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JR9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5JR9 FirstGlance]. <br> |
- | </td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5jrc|5jrc]], [[5jre|5jre]]</td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4Å</td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">NEQ131 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=228908 Microarchaeum sp. Kin4-M])</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5jr9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jr9 OCA], [https://pdbe.org/5jr9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5jr9 RCSB], [https://www.ebi.ac.uk/pdbsum/5jr9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5jr9 ProSAT]</span></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5jr9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jr9 OCA], [http://pdbe.org/5jr9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jr9 RCSB], [http://www.ebi.ac.uk/pdbsum/5jr9 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jr9 ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/Q74ML9_NANEQ Q74ML9_NANEQ] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| </StructureSection> | | </StructureSection> |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Microarchaeum sp. kin4-m]] | + | [[Category: Nanoarchaeum equitans Kin4-M]] |
- | [[Category: Gan, J]] | + | [[Category: Gan J]] |
- | [[Category: Zhang, J]] | + | [[Category: Zhang J]] |
- | [[Category: C3po]]
| + | |
- | [[Category: Dna binding protein]]
| + | |
- | [[Category: Open form]]
| + | |
| Structural highlights
Function
Q74ML9_NANEQ
Publication Abstract from PubMed
Translin and translin-associated factor-x are highly conserved in eukaroytes; they can form heteromeric complexes (known as C3POs) and participate in various nucleic acid metabolism pathways. In humans and Drosophila, C3POs cleave the fragmented siRNA passenger strands and facilitate the activation of RNA-induced silencing complex, the effector complex of RNA interference (RNAi). Here, we report three crystal structures of Nanoarchaeum equitans (Ne) C3PO. The apo-NeC3PO structure adopts an open form and unravels a potential substrates entryway for the first time. The NeC3PO:ssRNA and NeC3PO:ssDNA complexes fold like closed football with the substrates captured at the inner cavities. The NeC3PO:ssRNA structure represents the only catalytic form C3PO complex available to date; with mutagenesis and in vitro cleavage assays, the structure provides critical insights into the substrate binding and the two-cation-assisted catalytic mechanisms that are shared by eukaryotic C3POs. The work presented here further advances our understanding on the RNAi pathway.
Structural basis for single-stranded RNA recognition and cleavage by C3PO.,Zhang J, Liu H, Yao Q, Yu X, Chen Y, Cui R, Wu B, Zheng L, Zuo J, Huang Z, Ma J, Gan J Nucleic Acids Res. 2016 Sep 4. pii: gkw776. PMID:27596600[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Zhang J, Liu H, Yao Q, Yu X, Chen Y, Cui R, Wu B, Zheng L, Zuo J, Huang Z, Ma J, Gan J. Structural basis for single-stranded RNA recognition and cleavage by C3PO. Nucleic Acids Res. 2016 Sep 4. pii: gkw776. PMID:27596600 doi:http://dx.doi.org/10.1093/nar/gkw776
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