|
|
Line 3: |
Line 3: |
| <StructureSection load='5jx2' size='340' side='right'caption='[[5jx2]], [[Resolution|resolution]] 2.05Å' scene=''> | | <StructureSection load='5jx2' size='340' side='right'caption='[[5jx2]], [[Resolution|resolution]] 2.05Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[5jx2]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Trepa Trepa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JX2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5JX2 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5jx2]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Treponema_pallidum_subsp._pallidum_str._Nichols Treponema pallidum subsp. pallidum str. Nichols]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JX2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5JX2 FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BTB:2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>BTB</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.0504Å</td></tr> |
- | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ALY:N(6)-ACETYLLYSINE'>ALY</scene></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ALY:N(6)-ACETYLLYSINE'>ALY</scene>, <scene name='pdbligand=BTB:2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>BTB</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">mglB, tpp38, TP_0684 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243276 TREPA])</td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5jx2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jx2 OCA], [https://pdbe.org/5jx2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5jx2 RCSB], [https://www.ebi.ac.uk/pdbsum/5jx2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5jx2 ProSAT]</span></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5jx2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jx2 OCA], [http://pdbe.org/5jx2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jx2 RCSB], [http://www.ebi.ac.uk/pdbsum/5jx2 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jx2 ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| == Function == | | == Function == |
- | [[http://www.uniprot.org/uniprot/MGLB_TREPA MGLB_TREPA]] May be involved in the transport of sugars. May have a role in chemotaxis. | + | [https://www.uniprot.org/uniprot/MGLB_TREPA MGLB_TREPA] May be involved in the transport of sugars. May have a role in chemotaxis. |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
Line 25: |
Line 24: |
| </StructureSection> | | </StructureSection> |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Trepa]] | + | [[Category: Treponema pallidum subsp. pallidum str. Nichols]] |
- | [[Category: Brautigam, C A]] | + | [[Category: Brautigam CA]] |
- | [[Category: Deka, R K]] | + | [[Category: Deka RK]] |
- | [[Category: Norgard, M V]] | + | [[Category: Norgard MV]] |
- | [[Category: Glucose-binding protein]]
| + | |
- | [[Category: Transport protein]]
| + | |
| Structural highlights
Function
MGLB_TREPA May be involved in the transport of sugars. May have a role in chemotaxis.
Publication Abstract from PubMed
Treponema pallidum, the bacterium that causes syphilis, is an obligate human parasite. As such, it must acquire energy, in the form of carbon sources, from the host. There is ample evidence that the principal source of energy for this spirochete is D-glucose acquired from its environment, likely via an ABC transporter. Further, there is genetic evidence of a D-glucose chemotaxis system in T. pallidum. Both of these processes may be dependent on a single lipidated chemoreceptor: Tp0684, also called TpMglB-2 for its sequence homology to MglB of Escherichia coli. To broaden our understanding of this potentially vital protein, we determined a 2.05-A X-ray crystal structure of a soluble form of the recombinant protein. Like its namesake, TpMglB-2 adopts a bilobed fold that is similar to that of the ligand-binding proteins (LBPs) of other ABC transporters. However, the protein has an unusual, circularly permuted topology. This feature prompted a series of biophysical studies that examined whether the protein's topological distinctiveness affected its putative chemoreceptor functions. Differential scanning fluorimetry and isothermal titration calorimetry were used to confirm that the protein bound D-glucose in a cleft between its two lobes. Additionally, analytical ultracentrifugation was employed to reveal that D-glucose binding is accompanied by a significant conformational change. TpMglB-2 thus appears to be fully functional in vitro, and given the probable central importance of the protein to T. pallidum's physiology, our results have implications for the viability and pathogenicity of this obligate human pathogen.
The Tp0684 (MglB-2) Lipoprotein of Treponema pallidum: A Glucose-Binding Protein with Divergent Topology.,Brautigam CA, Deka RK, Liu WZ, Norgard MV PLoS One. 2016 Aug 18;11(8):e0161022. doi: 10.1371/journal.pone.0161022., eCollection 2016. PMID:27536942[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Brautigam CA, Deka RK, Liu WZ, Norgard MV. The Tp0684 (MglB-2) Lipoprotein of Treponema pallidum: A Glucose-Binding Protein with Divergent Topology. PLoS One. 2016 Aug 18;11(8):e0161022. doi: 10.1371/journal.pone.0161022., eCollection 2016. PMID:27536942 doi:http://dx.doi.org/10.1371/journal.pone.0161022
|