5kaq

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Current revision (10:44, 27 September 2023) (edit) (undo)
 
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<StructureSection load='5kaq' size='340' side='right'caption='[[5kaq]], [[Resolution|resolution]] 3.51&Aring;' scene=''>
<StructureSection load='5kaq' size='340' side='right'caption='[[5kaq]], [[Resolution|resolution]] 3.51&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5kaq]] is a 9 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human] and [http://en.wikipedia.org/wiki/Influenza_a_virus_(a/hong_kong/1-4-ma21-1/1968(h3n2)) Influenza a virus (a/hong kong/1-4-ma21-1/1968(h3n2))]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KAQ OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5KAQ FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5kaq]] is a 9 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Influenza_A_virus_(A/Hong_Kong/1-4-MA21-1/1968(H3N2)) Influenza A virus (A/Hong Kong/1-4-MA21-1/1968(H3N2))]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KAQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5KAQ FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.514&#8491;</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">HA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=506380 Influenza A virus (A/Hong Kong/1-4-MA21-1/1968(H3N2))])</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5kaq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5kaq OCA], [http://pdbe.org/5kaq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5kaq RCSB], [http://www.ebi.ac.uk/pdbsum/5kaq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5kaq ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5kaq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5kaq OCA], [https://pdbe.org/5kaq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5kaq RCSB], [https://www.ebi.ac.uk/pdbsum/5kaq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5kaq ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/E1AFM4_9INFA E1AFM4_9INFA]] Binds to sialic acid-containing receptors on the cell surface, bringing about the attachment of the virus particle to the cell. This attachment induces virion internalization of about two third of the virus particles through clathrin-dependent endocytosis and about one third through a clathrin- and caveolin-independent pathway. Plays a major role in the determination of host range restriction and virulence. Class I viral fusion protein. Responsible for penetration of the virus into the cell cytoplasm by mediating the fusion of the membrane of the endocytosed virus particle with the endosomal membrane. Low pH in endosomes induces an irreversible conformational change in HA2, releasing the fusion hydrophobic peptide. Several trimers are required to form a competent fusion pore.[RuleBase:RU003324][SAAS:SAAS00046902]
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[https://www.uniprot.org/uniprot/E1AFM4_9INFA E1AFM4_9INFA] Binds to sialic acid-containing receptors on the cell surface, bringing about the attachment of the virus particle to the cell. This attachment induces virion internalization of about two third of the virus particles through clathrin-dependent endocytosis and about one third through a clathrin- and caveolin-independent pathway. Plays a major role in the determination of host range restriction and virulence. Class I viral fusion protein. Responsible for penetration of the virus into the cell cytoplasm by mediating the fusion of the membrane of the endocytosed virus particle with the endosomal membrane. Low pH in endosomes induces an irreversible conformational change in HA2, releasing the fusion hydrophobic peptide. Several trimers are required to form a competent fusion pore.[RuleBase:RU003324][SAAS:SAAS00046902]
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<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Human]]
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[[Category: Homo sapiens]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Joyce, M G]]
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[[Category: Joyce MG]]
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[[Category: Kwong, P D]]
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[[Category: Kwong PD]]
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[[Category: Mascola, J R]]
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[[Category: Mascola JR]]
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[[Category: McDermott, A B]]
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[[Category: McDermott AB]]
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[[Category: Thomas, P V]]
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[[Category: Thomas PV]]
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[[Category: Wheatley, A K]]
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[[Category: Wheatley AK]]
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[[Category: H5]]
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[[Category: Immune system]]
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[[Category: Influenza]]
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[[Category: Multidonor]]
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[[Category: Universal influenza vaccine]]
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Current revision

Crystal structure of broadly neutralizing Influenza A antibody 31.a.83 in complex with Hemagglutinin Hong Kong 1968.

PDB ID 5kaq

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