5koz

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:50, 27 September 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='5koz' size='340' side='right'caption='[[5koz]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
<StructureSection load='5koz' size='340' side='right'caption='[[5koz]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5koz]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/"rhodobacillus_palustris"_molisch_1907 "rhodobacillus palustris" molisch 1907]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KOZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5KOZ FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5koz]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodopseudomonas_palustris Rhodopseudomonas palustris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KOZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5KOZ FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CAP:2-CARBOXYARABINITOL-1,5-DIPHOSPHATE'>CAP</scene>, <scene name='pdbligand=CO3:CARBONATE+ION'>CO3</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">cbbM, RPA4641 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1076 "Rhodobacillus palustris" Molisch 1907])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CAP:2-CARBOXYARABINITOL-1,5-DIPHOSPHATE'>CAP</scene>, <scene name='pdbligand=CO3:CARBONATE+ION'>CO3</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ribulose-bisphosphate_carboxylase Ribulose-bisphosphate carboxylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.39 4.1.1.39] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5koz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5koz OCA], [https://pdbe.org/5koz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5koz RCSB], [https://www.ebi.ac.uk/pdbsum/5koz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5koz ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5koz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5koz OCA], [http://pdbe.org/5koz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5koz RCSB], [http://www.ebi.ac.uk/pdbsum/5koz PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5koz ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/RBL2_RHOPA RBL2_RHOPA]] RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site (By similarity).
+
[https://www.uniprot.org/uniprot/RBL2_RHOPA RBL2_RHOPA] RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site (By similarity).
==See Also==
==See Also==
-
*[[RuBisCO|RuBisCO]]
+
*[[RuBisCO 3D structures|RuBisCO 3D structures]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Rhodobacillus palustris molisch 1907]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Ribulose-bisphosphate carboxylase]]
+
[[Category: Rhodopseudomonas palustris]]
-
[[Category: Arbing, M A]]
+
[[Category: Arbing MA]]
-
[[Category: North, J A]]
+
[[Category: North JA]]
-
[[Category: Satagopan, S]]
+
[[Category: Satagopan S]]
-
[[Category: Tabita, F R]]
+
[[Category: Tabita FR]]
-
[[Category: Hexamer]]
+
-
[[Category: Lyase]]
+
-
[[Category: Rubisco]]
+

Current revision

Structure function studies of R. palustris RubisCO (K192C mutant; CABP-bound)

PDB ID 5koz

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools