AlphaFold/Index
From Proteopedia
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==Interpreting Predictions== | ==Interpreting Predictions== | ||
*[[AlphaFold pLDDT and expected distance error]] | *[[AlphaFold pLDDT and expected distance error]] | ||
| + | *[[Calculating GDT TS]] the Global Distance Test Total Score, one of the metrics used for judging accuracy of predictions in the [[CASP]] competitions. | ||
==Examples of Predictions== | ==Examples of Predictions== | ||
*[[AlphaFold2 examples from CASP 14]]. A detailed analysis of several AlphaFold predictions compared with [[Empirical models|empirically-determined structures]]. | *[[AlphaFold2 examples from CASP 14]]. A detailed analysis of several AlphaFold predictions compared with [[Empirical models|empirically-determined structures]]. | ||
Revision as of 23:52, 28 September 2023
Here are pages in Proteopedia that relate to AlphaFold.
- AlphaFold. An introduction and overview.
- Theoretical models describes the breakthrough in structure prediction made by AlphaFold in CASP 14 (2020) and the continued pre-eminence of AlphaFold in CASP 15 [2022].
Making Predictions
- How to predict structures with AlphaFold when the AlphaFold Database does not already have what you want.
- Joining AlphaFold predictions for halves of a molecule, when the sequence is too long for AlphaFold to handle.
Interpreting Predictions
- AlphaFold pLDDT and expected distance error
- Calculating GDT TS the Global Distance Test Total Score, one of the metrics used for judging accuracy of predictions in the CASP competitions.
Examples of Predictions
- AlphaFold2 examples from CASP 14. A detailed analysis of several AlphaFold predictions compared with empirically-determined structures.
