5l16
From Proteopedia
(Difference between revisions)
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<StructureSection load='5l16' size='340' side='right'caption='[[5l16]], [[Resolution|resolution]] 1.88Å' scene=''> | <StructureSection load='5l16' size='340' side='right'caption='[[5l16]], [[Resolution|resolution]] 1.88Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[5l16]] is a 1 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[5l16]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Leishmania_major Leishmania major]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5L16 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5L16 FirstGlance]. <br> |
| - | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.882Å</td></tr> |
| - | <tr id=' | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5l16 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5l16 OCA], [https://pdbe.org/5l16 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5l16 RCSB], [https://www.ebi.ac.uk/pdbsum/5l16 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5l16 ProSAT]</span></td></tr> | |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | |
</table> | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/SPS2_LEIMA SPS2_LEIMA] Synthesizes selenophosphate from selenide and ATP.<ref>PMID:18812192</ref> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | Eukaryotes from the Excavata superphylum have been used as models to study the evolution of cellular molecular processes. Strikingly, human parasites of the Trypanosomatidae family (T. brucei, T. cruzi and L. major) conserve the complex machinery responsible for selenocysteine biosynthesis and incorporation in selenoproteins (SELENOK/SelK, SELENOT/SelT and SELENOTryp/SelTryp), although these proteins do not seem to be essential for parasite viability under laboratory controlled conditions. Selenophosphate synthetase (SEPHS/SPS) plays an indispensable role in selenium metabolism, being responsible for catalyzing the formation of selenophosphate, the biological selenium donor for selenocysteine synthesis. We solved the crystal structure of the L. major selenophosphate synthetase and confirmed that its dimeric organization is functionally important throughout the domains of life. We also demonstrated its interaction with selenocysteine lyase (SCLY) and showed that it is not present in other stable assemblies involved in the selenocysteine pathway, namely the phosphoseryl-tRNASec kinase (PSTK)-Sec-tRNASec synthase (SEPSECS) complex and the tRNASec-specific elongation factor (eEFSec) complex. Endoplasmic reticulum stress with dithiothreitol (DTT) or tunicamycin upon selenophosphate synthetase ablation in procyclic T. brucei cells led to a growth defect. On the other hand, only DTT presented a negative effect in bloodstream T. brucei expressing selenophosphate synthetase-RNAi. Furthermore, selenoprotein T (SELENOT) was dispensable for both forms of the parasite. Together, our data suggest a role for the T. brucei selenophosphate synthetase in the regulation of the parasite's ER stress response. | ||
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| + | Trypanosomatid selenophosphate synthetase structure, function and interaction with selenocysteine lyase.,da Silva MTA, Silva IRE, Faim LM, Bellini NK, Pereira ML, Lima AL, de Jesus TCL, Costa FC, Watanabe TF, Pereira HD, Valentini SR, Zanelli CF, Borges JC, Dias MVB, da Cunha JPC, Mittra B, Andrews NW, Thiemann OH PLoS Negl Trop Dis. 2020 Oct 5;14(10):e0008091. doi: , 10.1371/journal.pntd.0008091. eCollection 2020 Oct. PMID:33017394<ref>PMID:33017394</ref> | ||
| + | |||
| + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| + | </div> | ||
| + | <div class="pdbe-citations 5l16" style="background-color:#fffaf0;"></div> | ||
| + | == References == | ||
| + | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | [[Category: | + | [[Category: Leishmania major]] |
| - | + | [[Category: Brandao-Neto J]] | |
| - | [[Category: Brandao-Neto | + | [[Category: Dias MB]] |
| - | [[Category: Dias | + | [[Category: Faim LM]] |
| - | [[Category: Faim | + | [[Category: Pereira HM]] |
| - | [[Category: Pereira | + | [[Category: Silva IR]] |
| - | [[Category: Silva | + | [[Category: Silva MTA]] |
| - | [[Category: Silva | + | [[Category: Thiemann OH]] |
| - | [[Category: Thiemann | + | |
| - | + | ||
| - | + | ||
Current revision
Crystal Structure of N-terminus truncated selenophosphate synthetase from Leishmania major
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