5v6d

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Current revision (13:42, 4 October 2023) (edit) (undo)
 
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<StructureSection load='5v6d' size='340' side='right'caption='[[5v6d]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
<StructureSection load='5v6d' size='340' side='right'caption='[[5v6d]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5v6d]] is a 16 chain structure with sequence from [http://en.wikipedia.org/wiki/Neig2 Neig2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5V6D OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5V6D FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5v6d]] is a 16 chain structure with sequence from [https://en.wikipedia.org/wiki/Neisseria_gonorrhoeae_NCCP11945 Neisseria gonorrhoeae NCCP11945]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5V6D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5V6D FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.85&#8491;</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ndk, NGK_1320 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=521006 NEIG2])</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nucleoside-diphosphate_kinase Nucleoside-diphosphate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.4.6 2.7.4.6] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5v6d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5v6d OCA], [https://pdbe.org/5v6d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5v6d RCSB], [https://www.ebi.ac.uk/pdbsum/5v6d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5v6d ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5v6d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5v6d OCA], [http://pdbe.org/5v6d PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5v6d RCSB], [http://www.ebi.ac.uk/pdbsum/5v6d PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5v6d ProSAT]</span></td></tr>
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</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/NDK_NEIG2 NDK_NEIG2]] Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.
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[https://www.uniprot.org/uniprot/NDK_NEIG2 NDK_NEIG2] Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.
==See Also==
==See Also==
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</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Neig2]]
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[[Category: Neisseria gonorrhoeae NCCP11945]]
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[[Category: Nucleoside-diphosphate kinase]]
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[[Category: Structural genomic]]
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[[Category: Nucleoside diphosphate kinase]]
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[[Category: Ssgcid]]
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[[Category: Transferase]]
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Current revision

Crystal structure of nucleoside diphosphate kinase from Neisseria gonorrhoeae in complex with citrate

PDB ID 5v6d

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