5v88

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:43, 4 October 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='5v88' size='340' side='right'caption='[[5v88]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
<StructureSection load='5v88' size='340' side='right'caption='[[5v88]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5v88]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5V88 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5V88 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5v88]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_T4 Escherichia virus T4] and [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5V88 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5V88 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=8ZD:N-{2-[({1-[(2R)-PENTAN-2-YL]PIPERIDIN-4-YL}{[3-(TRIFLUOROMETHYL)PHENYL]CARBAMOYL}AMINO)METHYL]PHENYL}PROPANAMIDE'>8ZD</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.601&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5v89|5v89]], [[5v86|5v86]], [[5v83|5v83]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=8ZD:N-{2-[({1-[(2R)-PENTAN-2-YL]PIPERIDIN-4-YL}{[3-(TRIFLUOROMETHYL)PHENYL]CARBAMOYL}AMINO)METHYL]PHENYL}PROPANAMIDE'>8ZD</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">DCUN1D1, DCUN1L1, RP42, SCCRO ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5v88 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5v88 OCA], [https://pdbe.org/5v88 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5v88 RCSB], [https://www.ebi.ac.uk/pdbsum/5v88 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5v88 ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5v88 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5v88 OCA], [http://pdbe.org/5v88 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5v88 RCSB], [http://www.ebi.ac.uk/pdbsum/5v88 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5v88 ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/DCNL1_HUMAN DCNL1_HUMAN] Part of an E3 ubiquitin ligase complex for neddylation. Required for neddylation of cullin components of E3 cullin-RING ubiquitin ligase complexes by enhancing the rate of cullins neddylation. Functions to recruit the NEDD8-charged E2 enzyme to the cullin component. Involved in the release of inhibitory effets of CAND1 on cullin-RING ligase E3 complex assembly and activity. Acts also as an oncogene facilitating malignant transformation and carcinogenic progression (By similarity).[https://www.uniprot.org/uniprot/ENLYS_BPT4 ENLYS_BPT4] Endolysin with lysozyme activity that degrades host peptidoglycans and participates with the holin and spanin proteins in the sequential events which lead to the programmed host cell lysis releasing the mature viral particles. Once the holin has permeabilized the host cell membrane, the endolysin can reach the periplasm and break down the peptidoglycan layer.<ref>PMID:22389108</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 23: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Human]]
+
[[Category: Escherichia virus T4]]
 +
[[Category: Homo sapiens]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Lysozyme]]
+
[[Category: Guy RK]]
-
[[Category: Guy, R K]]
+
[[Category: Hammill JT]]
-
[[Category: Hammill, J T]]
+
[[Category: Schulman BA]]
-
[[Category: Schulman, B A]]
+
[[Category: Scott DC]]
-
[[Category: Scott, D C]]
+
-
[[Category: E3 ligase]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Ligase - protein binding complex]]
+

Current revision

Structure of DCN1 bound to NAcM-COV

PDB ID 5v88

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools