5vks

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Current revision (13:50, 4 October 2023) (edit) (undo)
 
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<StructureSection load='5vks' size='340' side='right'caption='[[5vks]], [[Resolution|resolution]] 1.94&Aring;' scene=''>
<StructureSection load='5vks' size='340' side='right'caption='[[5vks]], [[Resolution|resolution]] 1.94&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5vks]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Human_group_a_rotavirus Human group a rotavirus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5VKS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5VKS FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5vks]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Human_rotavirus_A Human rotavirus A]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5VKS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5VKS FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.94&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5vki|5vki]]</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">VP4 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10941 Human group A rotavirus])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5vks FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5vks OCA], [https://pdbe.org/5vks PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5vks RCSB], [https://www.ebi.ac.uk/pdbsum/5vks PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5vks ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5vks FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5vks OCA], [http://pdbe.org/5vks PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5vks RCSB], [http://www.ebi.ac.uk/pdbsum/5vks PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5vks ProSAT]</span></td></tr>
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</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/A7YCM0_9REOV A7YCM0_9REOV]] Outer capsid protein VP5*: forms the spike "foot" and "body". Acts as a membrane permeabilization protein that mediates release of viral particles from endosomal compartments into the cytoplasm. In integrin-dependent strains, VP5* targets the integrin heterodimer ITGA2/ITGB1 for cell attachment.[SAAS:SAAS00846030] VP8* forms the head of the spikes. It is the viral hemagglutinin and an important target of neutralizing antibodies. In sialic acid-dependent strains, VP8* binds to host cell sialic acid, most probably a ganglioside, providing the initial contact.[SAAS:SAAS00846016]
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[https://www.uniprot.org/uniprot/A7YCM0_9VIRU A7YCM0_9VIRU]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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</div>
</div>
<div class="pdbe-citations 5vks" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 5vks" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[Virus coat proteins 3D structures|Virus coat proteins 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Human group a rotavirus]]
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[[Category: Human rotavirus A]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Jiang, X]]
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[[Category: Jiang X]]
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[[Category: Kennedy, M A]]
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[[Category: Kennedy MA]]
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[[Category: Liu, Y]]
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[[Category: Liu Y]]
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[[Category: Woodruff, A]]
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[[Category: Woodruff A]]
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[[Category: Xu, S]]
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[[Category: Xu S]]
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[[Category: Zhong, W]]
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[[Category: Zhong W]]
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[[Category: Complex]]
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[[Category: Lnfpi]]
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[[Category: Viral protein]]
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Current revision

Crystal structure of P[19] rotavirus VP8* complexed with LNFPI

PDB ID 5vks

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