5vnr

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Current revision (13:52, 4 October 2023) (edit) (undo)
 
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<StructureSection load='5vnr' size='340' side='right'caption='[[5vnr]], [[Resolution|resolution]] 1.63&Aring;' scene=''>
<StructureSection load='5vnr' size='340' side='right'caption='[[5vnr]], [[Resolution|resolution]] 1.63&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5vnr]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bpt4 Bpt4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5VNR OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5VNR FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5vnr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_T4 Escherichia virus T4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5VNR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5VNR FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HED:2-HYDROXYETHYL+DISULFIDE'>HED</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.631&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5vnq|5vnq]]</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HED:2-HYDROXYETHYL+DISULFIDE'>HED</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">e, T4Tp126 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10665 BPT4])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5vnr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5vnr OCA], [https://pdbe.org/5vnr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5vnr RCSB], [https://www.ebi.ac.uk/pdbsum/5vnr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5vnr ProSAT]</span></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5vnr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5vnr OCA], [http://pdbe.org/5vnr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5vnr RCSB], [http://www.ebi.ac.uk/pdbsum/5vnr PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5vnr ProSAT]</span></td></tr>
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</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/ENLYS_BPT4 ENLYS_BPT4] Endolysin with lysozyme activity that degrades host peptidoglycans and participates with the holin and spanin proteins in the sequential events which lead to the programmed host cell lysis releasing the mature viral particles. Once the holin has permeabilized the host cell membrane, the endolysin can reach the periplasm and break down the peptidoglycan layer.<ref>PMID:22389108</ref>
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<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Bpt4]]
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[[Category: Escherichia virus T4]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Lysozyme]]
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[[Category: Cuneo MJ]]
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[[Category: Cuneo, M J]]
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[[Category: Li L]]
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[[Category: Li, L]]
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[[Category: Meilleur F]]
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[[Category: Meilleur, F]]
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[[Category: Myles DAA]]
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[[Category: Myles, D A.A]]
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[[Category: Pierce J]]
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[[Category: Pierce, J]]
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[[Category: Shukla S]]
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[[Category: Shukla, S]]
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[[Category: Standaert RF]]
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[[Category: Standaert, R F]]
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[[Category: Hydrogen bond]]
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[[Category: Hydrogen bonding network]]
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[[Category: Hydrolase]]
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[[Category: Neutron crystallography]]
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[[Category: T4 lysozyme]]
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[[Category: Water]]
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Current revision

X-ray structure of perdeuterated T4 lysozyme cysteine-free pseudo-wild type at cryogenic temperature

PDB ID 5vnr

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