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5vps

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Current revision (13:54, 4 October 2023) (edit) (undo)
 
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<StructureSection load='5vps' size='340' side='right'caption='[[5vps]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
<StructureSection load='5vps' size='340' side='right'caption='[[5vps]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5vps]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bura4 Bura4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5VPS OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5VPS FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5vps]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Burkholderia_ambifaria_MC40-6 Burkholderia ambifaria MC40-6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5VPS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5VPS FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=9G1:[(4~{S})-3-AMINOCARBONYL-1-[(2~{R},3~{R},4~{S},5~{R})-5-[[[[(2~{R},3~{R},4~{R},5~{R})-5-(6-AMINOPURIN-9-YL)-3-OXIDANYL-4-PHOSPHONOOXY-OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL]OXY-OXIDANYL-PHOSPHORYL]OXYMETHYL]-3,4-BIS(OXIDANYL)OXOLAN-2-YL]PIPERIDIN-4-YL]-TRIS(3-HYDROXY-3-OXOPROPYL)PHOSPHANIUM'>9G1</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.45&#8491;</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BamMC406_2208 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=398577 BURA4])</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=9G1:[(4~{S})-3-AMINOCARBONYL-1-[(2~{R},3~{R},4~{S},5~{R})-5-[[[[(2~{R},3~{R},4~{R},5~{R})-5-(6-AMINOPURIN-9-YL)-3-OXIDANYL-4-PHOSPHONOOXY-OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL]OXY-OXIDANYL-PHOSPHORYL]OXYMETHYL]-3,4-BIS(OXIDANYL)OXOLAN-2-YL]PIPERIDIN-4-YL]-TRIS(3-HYDROXY-3-OXOPROPYL)PHOSPHANIUM'>9G1</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5vps FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5vps OCA], [http://pdbe.org/5vps PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5vps RCSB], [http://www.ebi.ac.uk/pdbsum/5vps PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5vps ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5vps FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5vps OCA], [https://pdbe.org/5vps PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5vps RCSB], [https://www.ebi.ac.uk/pdbsum/5vps PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5vps ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/B1YU47_BURA4 B1YU47_BURA4]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Bura4]]
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[[Category: Burkholderia ambifaria MC40-6]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Structural genomic]]
 
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[[Category: Dehydrogenase]]
 
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[[Category: Nadp]]
 
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[[Category: Nadph]]
 
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[[Category: Oxidoreductase]]
 
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[[Category: Reductase]]
 
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[[Category: Sgcid]]
 
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[[Category: Short chain]]
 
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[[Category: Ssgcid]]
 
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[[Category: Tcep]]
 

Current revision

Crystal structure of an SDR from Burkholderia ambifaria in complex with NADPH with a TCEP adduct

PDB ID 5vps

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