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5vps
From Proteopedia
(Difference between revisions)
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<StructureSection load='5vps' size='340' side='right'caption='[[5vps]], [[Resolution|resolution]] 1.45Å' scene=''> | <StructureSection load='5vps' size='340' side='right'caption='[[5vps]], [[Resolution|resolution]] 1.45Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[5vps]] is a 1 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[5vps]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Burkholderia_ambifaria_MC40-6 Burkholderia ambifaria MC40-6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5VPS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5VPS FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=9G1:[(4~{S})-3-AMINOCARBONYL-1-[(2~{R},3~{R},4~{S},5~{R})-5-[[[[(2~{R},3~{R},4~{R},5~{R})-5-(6-AMINOPURIN-9-YL)-3-OXIDANYL-4-PHOSPHONOOXY-OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL]OXY-OXIDANYL-PHOSPHORYL]OXYMETHYL]-3,4-BIS(OXIDANYL)OXOLAN-2-YL]PIPERIDIN-4-YL]-TRIS(3-HYDROXY-3-OXOPROPYL)PHOSPHANIUM'>9G1</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.45Å</td></tr> |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=9G1:[(4~{S})-3-AMINOCARBONYL-1-[(2~{R},3~{R},4~{S},5~{R})-5-[[[[(2~{R},3~{R},4~{R},5~{R})-5-(6-AMINOPURIN-9-YL)-3-OXIDANYL-4-PHOSPHONOOXY-OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL]OXY-OXIDANYL-PHOSPHORYL]OXYMETHYL]-3,4-BIS(OXIDANYL)OXOLAN-2-YL]PIPERIDIN-4-YL]-TRIS(3-HYDROXY-3-OXOPROPYL)PHOSPHANIUM'>9G1</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr> | |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5vps FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5vps OCA], [https://pdbe.org/5vps PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5vps RCSB], [https://www.ebi.ac.uk/pdbsum/5vps PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5vps ProSAT]</span></td></tr> |
</table> | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/B1YU47_BURA4 B1YU47_BURA4] | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
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__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Burkholderia ambifaria MC40-6]] |
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | [[Category: Structural genomic]] | ||
| - | [[Category: Dehydrogenase]] | ||
| - | [[Category: Nadp]] | ||
| - | [[Category: Nadph]] | ||
| - | [[Category: Oxidoreductase]] | ||
| - | [[Category: Reductase]] | ||
| - | [[Category: Sgcid]] | ||
| - | [[Category: Short chain]] | ||
| - | [[Category: Ssgcid]] | ||
| - | [[Category: Tcep]] | ||
Current revision
Crystal structure of an SDR from Burkholderia ambifaria in complex with NADPH with a TCEP adduct
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