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5vvi

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==Crystal Structure of the Ligand Binding Domain of LysR-type Transcriptional Regulator, OccR from Agrobacterium tumefaciens in the Complex with Octopine==
==Crystal Structure of the Ligand Binding Domain of LysR-type Transcriptional Regulator, OccR from Agrobacterium tumefaciens in the Complex with Octopine==
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<StructureSection load='5vvi' size='340' side='right' caption='[[5vvi]], [[Resolution|resolution]] 2.28&Aring;' scene=''>
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<StructureSection load='5vvi' size='340' side='right'caption='[[5vvi]], [[Resolution|resolution]] 2.28&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5vvi]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Agrt4 Agrt4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5VVI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5VVI FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5vvi]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_tumefaciens_(strain_Ach5) Agrobacterium tumefaciens (strain Ach5)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5VVI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5VVI FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=6DB:OCTOPINE'>6DB</scene>, <scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.28&#8491;</td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=6DB:OCTOPINE'>6DB</scene>, <scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">occR ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=176298 AGRT4])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5vvi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5vvi OCA], [https://pdbe.org/5vvi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5vvi RCSB], [https://www.ebi.ac.uk/pdbsum/5vvi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5vvi ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5vvi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5vvi OCA], [http://pdbe.org/5vvi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5vvi RCSB], [http://www.ebi.ac.uk/pdbsum/5vvi PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5vvi ProSAT]</span></td></tr>
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</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/OCCR_AGRT4 OCCR_AGRT4]] Positive regulatory protein for the occ operon involved in octopine catabolism and uptake. Also acts as a negative regulator of its expression.
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[https://www.uniprot.org/uniprot/OCCR_AGRT4 OCCR_AGRT4] Positive regulatory protein for the occ operon involved in octopine catabolism and uptake. Also acts as a negative regulator of its expression.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Agrt4]]
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[[Category: Large Structures]]
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[[Category: Chhor, G]]
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[[Category: Chhor G]]
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[[Category: Jedrzejczak, R]]
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[[Category: Jedrzejczak R]]
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[[Category: Joachimiak, A]]
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[[Category: Joachimiak A]]
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[[Category: Kim, Y]]
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[[Category: Kim Y]]
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[[Category: Structural genomic]]
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[[Category: Winans SC]]
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[[Category: Winans, S C]]
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[[Category: Alpha-beta structure]]
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[[Category: Mcsg]]
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[[Category: Psi-biology]]
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[[Category: Transcription]]
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[[Category: Type 2 periplasmic binding fold]]
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Current revision

Crystal Structure of the Ligand Binding Domain of LysR-type Transcriptional Regulator, OccR from Agrobacterium tumefaciens in the Complex with Octopine

PDB ID 5vvi

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