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| <StructureSection load='5w4m' size='340' side='right'caption='[[5w4m]], [[Resolution|resolution]] 2.39Å' scene=''> | | <StructureSection load='5w4m' size='340' side='right'caption='[[5w4m]], [[Resolution|resolution]] 2.39Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[5w4m]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"group_ii"_minett_1934 "group ii" minett 1934]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5W4M OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5W4M FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5w4m]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_dysgalactiae Streptococcus dysgalactiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5W4M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5W4M FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.388Å</td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4yv6|4yv6]], [[5w4n|5w4n]]</td></tr>
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene></td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">mutR ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1334 "Group II" Minett 1934])</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5w4m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5w4m OCA], [https://pdbe.org/5w4m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5w4m RCSB], [https://www.ebi.ac.uk/pdbsum/5w4m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5w4m ProSAT]</span></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5w4m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5w4m OCA], [http://pdbe.org/5w4m PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5w4m RCSB], [http://www.ebi.ac.uk/pdbsum/5w4m PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5w4m ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/A0A0J9X288_STRDY A0A0J9X288_STRDY] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Group ii minett 1934]] | |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Capodagli, G C]] | + | [[Category: Streptococcus dysgalactiae]] |
- | [[Category: Neiditch, M B]] | + | [[Category: Capodagli GC]] |
- | [[Category: Dna binding]] | + | [[Category: Neiditch MB]] |
- | [[Category: Dna binding protein]]
| + | |
- | [[Category: Pheromone binding]]
| + | |
- | [[Category: Quorum sensing]]
| + | |
- | [[Category: Repeat domain]]
| + | |
- | [[Category: Rrnpp]]
| + | |
| Structural highlights
5w4m is a 2 chain structure with sequence from Streptococcus dysgalactiae. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
| Method: | X-ray diffraction, Resolution 2.388Å |
Ligands: | , , , , |
Resources: | FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT |
Function
A0A0J9X288_STRDY
Publication Abstract from PubMed
Rap/Rgg/NprR/PlcR/PrgX (RRNPP) quorum-sensing systems use extracellular peptide pheromones that are detected by cytoplasmic receptors to regulate gene expression in firmicute bacteria. Rgg-type receptors are allosterically regulated through direct pheromone binding to control transcriptional activity; however, the receptor activation mechanism remains poorly understood. Previous work has identified a disulfide bond between Cys-45 residues within the homodimer interface of Rgg2 from Streptococcus dysgalactiae (Rgg2Sd). Here, we compared two Rgg2Sd(C45S) X-ray crystal structures with that of wild-type Rgg2Sd and found that in the absence of the intermolecular disulfide, the Rgg2Sd dimer interface is destabilized and Rgg2Sd can adopt multiple conformations. One conformation closely resembled the disulfide-locked Rgg2Sd secondary and tertiary structures, but another displayed more extensive rigid-body shifts as well as dramatic secondary structure changes. In parallel experiments, a genetic screen was used to identify mutations in Rgg2 of Streptococcus pyogenes (Rgg2Sp) that conferred pheromone-independent transcriptional activation of an Rgg2-stimulated promoter. Eight mutations yielding constitutive Rgg2 activity, designated Rgg2Sp*, were identified and five of them clustered in or near an Rgg2 region that underwent conformational changes in one of the Rgg2Sd(C45S) crystal structures. The Rgg2Sp* mutations increased Rgg2Sp sensitivity to pheromone and pheromone variants while displaying decreased sensitivity to the Rgg2 antagonist cyclosporine A. We propose that Rgg2Sp* mutations invoke shifts in free-energy bias to favor the active state of the protein. Finally, we present evidence for an electrostatic interaction between an N-terminal Asp of the pheromone and Arg-153 within the proposed pheromone-binding pocket of Rgg2Sp.
Activating mutations in quorum-sensing regulator Rgg2 and its conformational flexibility in the absence of an intermolecular disulfide bond.,Wilkening RV, Capodagli GC, Khataokar A, Tylor KM, Neiditch MB, Federle MJ J Biol Chem. 2017 Oct 13. pii: jbc.M117.801670. doi: 10.1074/jbc.M117.801670. PMID:29030429[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Wilkening RV, Capodagli GC, Khataokar A, Tylor KM, Neiditch MB, Federle MJ. Activating mutations in quorum-sensing regulator Rgg2 and its conformational flexibility in the absence of an intermolecular disulfide bond. J Biol Chem. 2017 Oct 13. pii: jbc.M117.801670. doi: 10.1074/jbc.M117.801670. PMID:29030429 doi:http://dx.doi.org/10.1074/jbc.M117.801670
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