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| <StructureSection load='5wee' size='340' side='right'caption='[[5wee]], [[Resolution|resolution]] 1.99Å' scene=''> | | <StructureSection load='5wee' size='340' side='right'caption='[[5wee]], [[Resolution|resolution]] 1.99Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[5wee]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Helbk Helbk]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5WEE OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5WEE FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5wee]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Heligmosomoides_polygyrus_bakeri Heligmosomoides polygyrus bakeri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5WEE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5WEE FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.99Å</td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5wee FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5wee OCA], [http://pdbe.org/5wee PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5wee RCSB], [http://www.ebi.ac.uk/pdbsum/5wee PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5wee ProSAT]</span></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr> |
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5wee FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5wee OCA], [https://pdbe.org/5wee PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5wee RCSB], [https://www.ebi.ac.uk/pdbsum/5wee PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5wee ProSAT]</span></td></tr> |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/A0A183GMB4_HELPZ A0A183GMB4_HELPZ] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Helbk]] | + | [[Category: Heligmosomoides polygyrus bakeri]] |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Asojo, O A]] | + | [[Category: Asojo OA]] |
- | [[Category: Antigen 5]]
| + | |
- | [[Category: Lipid binding protein]]
| + | |
- | [[Category: Pathogenesis related-1]]
| + | |
- | [[Category: Sc7]]
| + | |
- | [[Category: Sperm-coating protein]]
| + | |
- | [[Category: Tpx]]
| + | |
- | [[Category: Venom allegen like]]
| + | |
| Structural highlights
Function
A0A183GMB4_HELPZ
Publication Abstract from PubMed
Heligmosomoides polygyrus bakeri is a model parasitic hookworm used to study animal and human helminth diseases. During infection, the parasite releases excretory/secretory products that modulate the immune system of the host. The most abundant protein family in excretory/secretory products comprises the venom allergen-like proteins (VALs), which are members of the SCP/TAPS (sperm-coating protein/Tpx/antigen 5/pathogenesis related-1/Sc7) superfamily. There are >30 secreted Heligmosomoides polygyrus VAL proteins (HpVALs) and these proteins are characterised by having either one or two 15kDa CAP (cysteine-rich secretory protein (CRISP)/antigen 5/pathogenesis related-1) domains. The first known HpVAL structure, HpVAL-4, refined to 1.9A is reported. HpVAL-4 was produced as a homogeneously glycosylated protein in leaves of Nicotiana benthamiana infiltrated with recombinant plasmids, making this plant expression platform amenable for the production of biological products. The overall topology of HpVAL-4 is a three layered alphabetaalpha sandwich between a short N-terminal loop and a C-terminal cysteine rich extension. The C-terminal cysteine rich extension has two strands stabilized by two disulfide bonds and superposes well with the previously reported extension from the human hookworm Necator americanus Ancylostoma secreted protein-2 (Na-ASP-2). The N-terminal loop is connected to alpha helix 2 via a disulfide bond previously observed in Na-ASP-2. HpVAL-4 has a central cavity that is more similar to the N-terminal CAP domain of the two CAP Na-ASP-1 from Necator americanus. Unlike Na-ASP-2, mammalian CRISP, and the C-terminal CAP domain of Na-ASP-1, the large central cavity of HpVAL-4 lacks the two histidines required to coordinate divalent cations. HpVAL-4 has both palmitate-binding and sterol-binding cavities and is able to complement the in vivo sterol export phenotype of yeast mutants lacking their endogenous CAP proteins. More studies are required to determine endogenous binding partners of HpVAL-4 and unravel the possible impact of sterol binding on immune-modulatory functions.
Heligmosomoides polygyrus Venom Allergen-like Protein-4 (HpVAL-4) is a sterol binding protein.,Asojo OA, Darwiche R, Gebremedhin S, Smant G, Lozano-Torres JL, Drurey C, Pollet J, Maizels RM, Schneiter R, Wilbers RHP Int J Parasitol. 2018 Mar 2. pii: S0020-7519(18)30042-0. doi:, 10.1016/j.ijpara.2018.01.002. PMID:29505764[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Asojo OA, Darwiche R, Gebremedhin S, Smant G, Lozano-Torres JL, Drurey C, Pollet J, Maizels RM, Schneiter R, Wilbers RHP. Heligmosomoides polygyrus Venom Allergen-like Protein-4 (HpVAL-4) is a sterol binding protein. Int J Parasitol. 2018 Mar 2. pii: S0020-7519(18)30042-0. doi:, 10.1016/j.ijpara.2018.01.002. PMID:29505764 doi:http://dx.doi.org/10.1016/j.ijpara.2018.01.002
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