6apb

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Current revision (14:22, 4 October 2023) (edit) (undo)
 
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<StructureSection load='6apb' size='340' side='right'caption='[[6apb]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
<StructureSection load='6apb' size='340' side='right'caption='[[6apb]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[6apb]] is a 5 chain structure with sequence from [http://en.wikipedia.org/wiki/Hrsv Hrsv] and [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6APB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6APB FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6apb]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Human_orthopneumovirus Human orthopneumovirus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6APB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6APB FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3&#8491;</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">F, MZ07_64039gpF, MZ07_64040gpF ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=11250 HRSV])</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6apb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6apb OCA], [http://pdbe.org/6apb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6apb RCSB], [http://www.ebi.ac.uk/pdbsum/6apb PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6apb ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6apb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6apb OCA], [https://pdbe.org/6apb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6apb RCSB], [https://www.ebi.ac.uk/pdbsum/6apb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6apb ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/FUS_HRSVA FUS_HRSVA] Class I viral fusion protein. Under the current model, the protein has at least 3 conformational states: pre-fusion native state, pre-hairpin intermediate state, and post-fusion hairpin state. During viral and plasma cell membrane fusion, the heptad repeat (HR) regions assume a trimer-of-hairpins structure, positioning the fusion peptide in close proximity to the C-terminal region of the ectodomain. The formation of this structure appears to drive apposition and subsequent fusion of viral and plasma cell membranes. Directs fusion of viral and cellular membranes leading to delivery of the nucleocapsid into the cytoplasm. This fusion is pH independent and occurs directly at the outer cell membrane. The trimer of F1-F2 (protein F) interacts with glycoprotein G at the virion surface. Upon binding of G to heparan sulfate, the hydrophobic fusion peptide is unmasked and interacts with the cellular membrane, inducing the fusion between host cell and virion membranes. Notably, RSV fusion protein is able to interact directly with heparan sulfate and therefore actively participates in virus attachment. Furthermore, the F2 subunit was identifed as the major determinant of RSV host cell specificity. Later in infection, proteins F expressed at the plasma membrane of infected cells mediate fusion with adjacent cells to form syncytia, a cytopathic effect that could lead to tissue necrosis. The fusion protein is also able to trigger p53-dependent apoptosis.<ref>PMID:12663767</ref> <ref>PMID:18216092</ref>
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<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Hrsv]]
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[[Category: Homo sapiens]]
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[[Category: Human]]
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[[Category: Human orthopneumovirus]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Gilman, M S.A]]
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[[Category: Gilman MSA]]
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[[Category: McLellan, J S]]
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[[Category: McLellan JS]]
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[[Category: Immune system]]
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[[Category: Immunoglobulin]]
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[[Category: Respiratory syncytial virus]]
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[[Category: Viral fusion glycoprotein]]
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Current revision

Crystal Structure of Non-Neutralizing Infant Antibody ADI-14359 in Complex with Postfusion RSV F Glycoprotein

PDB ID 6apb

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