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| | <StructureSection load='6bjg' size='340' side='right'caption='[[6bjg]], [[Resolution|resolution]] 2.29Å' scene=''> | | <StructureSection load='6bjg' size='340' side='right'caption='[[6bjg]], [[Resolution|resolution]] 2.29Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[6bjg]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Cirv Cirv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6BJG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6BJG FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6bjg]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Carnation_Italian_ringspot_virus Carnation Italian ringspot virus] and [https://en.wikipedia.org/wiki/Lampyridae Lampyridae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6BJG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6BJG FirstGlance]. <br> |
| - | </td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ORF4 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=39443 CIRV])</td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.29Å</td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6bjg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6bjg OCA], [http://pdbe.org/6bjg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6bjg RCSB], [http://www.ebi.ac.uk/pdbsum/6bjg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6bjg ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6bjg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6bjg OCA], [https://pdbe.org/6bjg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6bjg RCSB], [https://www.ebi.ac.uk/pdbsum/6bjg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6bjg ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | == Function == | | == Function == |
| - | [[http://www.uniprot.org/uniprot/P19_CIRV P19_CIRV]] Acts as a suppressor of RNA-mediated gene silencing, also known as post-transcriptional gene silencing (PTGS), a mechanism of plant viral defense that limits the accumulation of viral RNAs. Binds to short interfering RNAs (siRNAs) with high affinity. Acts as a molecular caliper to specifically select siRNAs based on the length of the duplex region of the RNA.<ref>PMID:14697199</ref> <ref>PMID:19254536</ref> | + | [https://www.uniprot.org/uniprot/P19_CIRV P19_CIRV] Acts as a suppressor of RNA-mediated gene silencing, also known as post-transcriptional gene silencing (PTGS), a mechanism of plant viral defense that limits the accumulation of viral RNAs. Binds to short interfering RNAs (siRNAs) with high affinity. Acts as a molecular caliper to specifically select siRNAs based on the length of the duplex region of the RNA.<ref>PMID:14697199</ref> <ref>PMID:19254536</ref> |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | </div> | | </div> |
| | <div class="pdbe-citations 6bjg" style="background-color:#fffaf0;"></div> | | <div class="pdbe-citations 6bjg" style="background-color:#fffaf0;"></div> |
| | + | |
| | + | ==See Also== |
| | + | *[[P19|P19]] |
| | + | *[[RNA silencing suppressor|RNA silencing suppressor]] |
| | == References == | | == References == |
| | <references/> | | <references/> |
| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Cirv]] | + | [[Category: Carnation Italian ringspot virus]] |
| | + | [[Category: Lampyridae]] |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Foss, D V]] | + | [[Category: Foss DV]] |
| - | [[Category: Macrae, I J]] | + | [[Category: Macrae IJ]] |
| - | [[Category: Pezacki, J P]] | + | [[Category: Pezacki JP]] |
| - | [[Category: Schirle, N]] | + | [[Category: Schirle N]] |
| - | [[Category: Altered affinity for microrna]]
| + | |
| - | [[Category: Rna binding protein]]
| + | |
| - | [[Category: Rna silencing sirna binding protein p19]]
| + | |
| - | [[Category: Viral suppressor]]
| + | |
| Structural highlights
Function
P19_CIRV Acts as a suppressor of RNA-mediated gene silencing, also known as post-transcriptional gene silencing (PTGS), a mechanism of plant viral defense that limits the accumulation of viral RNAs. Binds to short interfering RNAs (siRNAs) with high affinity. Acts as a molecular caliper to specifically select siRNAs based on the length of the duplex region of the RNA.[1] [2]
Publication Abstract from PubMed
Viral suppressors of RNA silencing (VSRSs) are a diverse group of viral proteins that have evolved to disrupt eukaryotic RNA silencing pathways, thereby contributing to viral pathogenicity. The p19 protein is a VSRS that selectively binds to short interfering RNAs (siRNAs) over microRNAs (miRNAs). Mutational analysis has identified single amino acid substitutions that reverse this selectivity through new high-affinity interactions with human miR-122. Herein, we report crystal structures of complexed p19-T111S (2.6 A), p19-T111H (2.3 A) and wild-type p19 protein (2.2 A) from the Carnation Italian ringspot virus with small interfering RNA (siRNA) ligands. Structural comparisons reveal that these mutations do not lead to major changes in p19 architecture, but instead promote subtle rearrangement of residues and solvent molecules along the p19 midline. These observations suggest p19 uses many small interactions to distinguish siRNAs from miRNAs and perturbing these interactions can create p19 variants with novel RNA-recognition properties. DATABASE: Model data are deposited in the PDB database under the accession numbers 6BJG, 6BJH and 6BJV.
Structural insights into interactions between viral suppressor of RNA silencing protein p19 mutants and small RNAs.,Foss DV, Schirle NT, MacRae IJ, Pezacki JP FEBS Open Bio. 2019 Jun;9(6):1042-1051. doi: 10.1002/2211-5463.12644. Epub 2019, May 17. PMID:31021526[3]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Vargason JM, Szittya G, Burgyan J, Tanaka Hall TM. Size selective recognition of siRNA by an RNA silencing suppressor. Cell. 2003 Dec 26;115(7):799-811. PMID:14697199
- ↑ Xia Z, Zhu Z, Zhu J, Zhou R. Recognition mechanism of siRNA by viral p19 suppressor of RNA silencing: a molecular dynamics study. Biophys J. 2009 Mar 4;96(5):1761-9. doi: 10.1016/j.bpj.2008.11.047. PMID:19254536 doi:http://dx.doi.org/10.1016/j.bpj.2008.11.047
- ↑ Foss DV, Schirle NT, MacRae IJ, Pezacki JP. Structural insights into interactions between viral suppressor of RNA silencing protein p19 mutants and small RNAs. FEBS Open Bio. 2019 Jun;9(6):1042-1051. doi: 10.1002/2211-5463.12644. Epub 2019, May 17. PMID:31021526 doi:http://dx.doi.org/10.1002/2211-5463.12644
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