6bp2

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Current revision (14:47, 4 October 2023) (edit) (undo)
 
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<StructureSection load='6bp2' size='340' side='right'caption='[[6bp2]], [[Resolution|resolution]] 3.17&Aring;' scene=''>
<StructureSection load='6bp2' size='340' side='right'caption='[[6bp2]], [[Resolution|resolution]] 3.17&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[6bp2]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human] and [http://en.wikipedia.org/wiki/Lake_victoria_marburgvirus Lake victoria marburgvirus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6BP2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6BP2 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6bp2]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Marburg_marburgvirus Marburg marburgvirus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6BP2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6BP2 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.172&#8491;</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">GP, DF49_53427gpGP ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=11269 Lake Victoria marburgvirus])</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6bp2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6bp2 OCA], [http://pdbe.org/6bp2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6bp2 RCSB], [http://www.ebi.ac.uk/pdbsum/6bp2 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6bp2 ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6bp2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6bp2 OCA], [https://pdbe.org/6bp2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6bp2 RCSB], [https://www.ebi.ac.uk/pdbsum/6bp2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6bp2 ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/VGP_MABVR VGP_MABVR] GP1 is responsible for binding to the receptor(s) on target cells. Interacts with CD209/DC-SIGN and CLEC4M/DC-SIGNR which act as cofactors for virus entry into the host cell. Binding to CD209 and CLEC4M, which are respectively found on dendritic cells (DCs), and on endothelial cells of liver sinusoids and lymph node sinuses, facilitate infection of macrophages and endothelial cells. These interactions not only facilitate virus cell entry, but also allow capture of viral particles by DCs and subsequent transmission to susceptible cells without DCs infection (trans infection) (By similarity). GP2 acts as a class I viral fusion protein. Under the current model, the protein has at least 3 conformational states: pre-fusion native state, pre-hairpin intermediate state, and post-fusion hairpin state. During viral and target cell membrane fusion, the coiled coil regions (heptad repeats) assume a trimer-of-hairpins structure, positioning the fusion peptide in close proximity to the C-terminal region of the ectodomain. The formation of this structure appears to drive apposition and subsequent fusion of viral and target cell membranes. Responsible for penetration of the virus into the cell cytoplasm by mediating the fusion of the membrane of the endocytosed virus particle with the endosomal membrane. Low pH in endosomes induces an irreversible conformational change in GP2, releasing the fusion hydrophobic peptide (By similarity).
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== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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==See Also==
==See Also==
*[[Glycoprotein GP 3D structures|Glycoprotein GP 3D structures]]
*[[Glycoprotein GP 3D structures|Glycoprotein GP 3D structures]]
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*[[Monoclonal Antibodies 3D structures|Monoclonal Antibodies 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Human]]
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[[Category: Homo sapiens]]
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[[Category: Lake victoria marburgvirus]]
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[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Alter, G]]
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[[Category: Marburg marburgvirus]]
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[[Category: Bukreyev, A]]
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[[Category: Alter G]]
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[[Category: Crowe, J E.J]]
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[[Category: Bukreyev A]]
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[[Category: Flyak, A I]]
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[[Category: Crowe JEJ]]
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[[Category: Fusco, M L]]
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[[Category: Flyak AI]]
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[[Category: Gunn, B]]
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[[Category: Fusco ML]]
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[[Category: Hastie, K M]]
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[[Category: Gunn B]]
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[[Category: Huang, K]]
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[[Category: Hastie KM]]
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[[Category: Ilinykh, P A]]
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[[Category: Huang K]]
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[[Category: King, L B]]
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[[Category: Ilinykh PA]]
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[[Category: Kirchdoerfer, R N]]
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[[Category: King LB]]
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[[Category: Meiler, J]]
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[[Category: Kirchdoerfer RN]]
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[[Category: Sangha, A K]]
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[[Category: Meiler J]]
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[[Category: Saphire, E O]]
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[[Category: Sangha AK]]
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[[Category: Complex]]
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[[Category: Saphire EO]]
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[[Category: Glycoprotein]]
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[[Category: Marburg]]
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[[Category: Ravn]]
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[[Category: Viral protein]]
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[[Category: Viral protein-immune system complex]]
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Current revision

Therapeutic human monoclonal antibody MR191 bound to a marburgvirus glycoprotein

PDB ID 6bp2

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