6d46

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:17, 4 October 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='6d46' size='340' side='right'caption='[[6d46]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
<StructureSection load='6d46' size='340' side='right'caption='[[6d46]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6d46]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Ricty Ricty]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6D46 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6D46 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6d46]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rickettsia_typhi_str._Wilmington Rickettsia typhi str. Wilmington]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6D46 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6D46 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">dnaN, RT0405 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=257363 RICTY])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6d46 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6d46 OCA], [http://pdbe.org/6d46 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6d46 RCSB], [http://www.ebi.ac.uk/pdbsum/6d46 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6d46 ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6d46 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6d46 OCA], [https://pdbe.org/6d46 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6d46 RCSB], [https://www.ebi.ac.uk/pdbsum/6d46 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6d46 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/DPO3B_RICTY DPO3B_RICTY]] Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of replication as well as for processivity of DNA replication.[UniProtKB:P0A988]
+
[https://www.uniprot.org/uniprot/DPO3B_RICTY DPO3B_RICTY] Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of replication as well as for processivity of DNA replication.[UniProtKB:P0A988]
==See Also==
==See Also==
Line 16: Line 16:
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Ricty]]
+
[[Category: Rickettsia typhi str. Wilmington]]
-
[[Category: Structural genomic]]
+
-
[[Category: Dna binding]]
+
-
[[Category: Dna binding protein]]
+
-
[[Category: Dnan]]
+
-
[[Category: Griselimycin]]
+
-
[[Category: National institute of allergy and infectious disease]]
+
-
[[Category: Niaid]]
+
-
[[Category: Polymerase]]
+
-
[[Category: Ssgcid]]
+

Current revision

Crystal structure of a DNA polymerase III subunit beta DnaN sliding clamp from Rickettsia typhi str. Wilmington

PDB ID 6d46

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools