This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5l0b

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (16:04, 4 October 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='5l0b' size='340' side='right'caption='[[5l0b]], [[Resolution|resolution]] 2.41&Aring;' scene=''>
<StructureSection load='5l0b' size='340' side='right'caption='[[5l0b]], [[Resolution|resolution]] 2.41&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5l0b]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Buffalo_rat Buffalo rat]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5L0B OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5L0B FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5l0b]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5L0B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5L0B FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=6ZM:1-{2-[(2,3-DIHYDRO-1H-INDEN-2-YL)AMINO]-7,8-DIHYDROPYRIDO[4,3-D]PYRIMIDIN-6(5H)-YL}ETHAN-1-ONE'>6ZM</scene>, <scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.41&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5l0e|5l0e]], [[5l0k|5l0k]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=6ZM:1-{2-[(2,3-DIHYDRO-1H-INDEN-2-YL)AMINO]-7,8-DIHYDROPYRIDO[4,3-D]PYRIMIDIN-6(5H)-YL}ETHAN-1-ONE'>6ZM</scene>, <scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Enpp2, Atx, Npps2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10116 Buffalo rat])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5l0b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5l0b OCA], [https://pdbe.org/5l0b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5l0b RCSB], [https://www.ebi.ac.uk/pdbsum/5l0b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5l0b ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Alkylglycerophosphoethanolamine_phosphodiesterase Alkylglycerophosphoethanolamine phosphodiesterase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.4.39 3.1.4.39] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5l0b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5l0b OCA], [http://pdbe.org/5l0b PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5l0b RCSB], [http://www.ebi.ac.uk/pdbsum/5l0b PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5l0b ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/ENPP2_RAT ENPP2_RAT]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 26: Line 26:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Alkylglycerophosphoethanolamine phosphodiesterase]]
 
-
[[Category: Buffalo rat]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Durbin, J D]]
+
[[Category: Rattus norvegicus]]
-
[[Category: Hydrolase-hydrolase inhibitor complex]]
+
[[Category: Durbin JD]]
-
[[Category: Phospholipase]]
+

Current revision

Crystal Structure of Autotaxin and Compound 1

PDB ID 5l0b

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5l0b"
Personal tools