5l71

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Current revision (16:09, 4 October 2023) (edit) (undo)
 
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<StructureSection load='5l71' size='340' side='right'caption='[[5l71]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
<StructureSection load='5l71' size='340' side='right'caption='[[5l71]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5l71]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5L71 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5L71 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5l71]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5L71 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5L71 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Gpx4 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 LK3 transgenic mice])</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phospholipid-hydroperoxide_glutathione_peroxidase Phospholipid-hydroperoxide glutathione peroxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.12 1.11.1.12] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5l71 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5l71 OCA], [https://pdbe.org/5l71 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5l71 RCSB], [https://www.ebi.ac.uk/pdbsum/5l71 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5l71 ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5l71 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5l71 OCA], [http://pdbe.org/5l71 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5l71 RCSB], [http://www.ebi.ac.uk/pdbsum/5l71 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5l71 ProSAT]</span></td></tr>
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</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/GPX41_MOUSE GPX41_MOUSE]] Protects cells against membrane lipid peroxidation and cell death (PubMed:12566075). Required for normal sperm development and male fertility (PubMed:19417079). Could play a major role in protecting mammals from the toxicity of ingested lipid hydroperoxides. Essential for embryonic development (PubMed:12566075). Protects from radiation and oxidative damage (PubMed:12566075). Essential for maturation and survival of photoreceptor cells (PubMed:22207760). Plays a role in a primary T cell response to viral and parasitic infection by protecting T cells from ferroptosis, a cell death resulting from an iron-dependent accumulation of lipid reactive oxygen species, and by supporting T cell expansion (PubMed:25824823).<ref>PMID:12566075</ref> <ref>PMID:18762024</ref> <ref>PMID:19417079</ref> <ref>PMID:22207760</ref> <ref>PMID:25824823</ref>
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[https://www.uniprot.org/uniprot/GPX4_MOUSE GPX4_MOUSE] Essential antioxidant peroxidase that directly reduces phospholipid hydroperoxide even if they are incorporated in membranes and lipoproteins (PubMed:29290465). Can also reduce fatty acid hydroperoxide, cholesterol hydroperoxide and thymine hydroperoxide (By similarity). Plays a key role in protecting cells from oxidative damage by preventing membrane lipid peroxidation (PubMed:12566075). Required to prevent cells from ferroptosis, a non-apoptotic cell death resulting from an iron-dependent accumulation of lipid reactive oxygen species (PubMed:12566075, PubMed:24439385, PubMed:25402683, PubMed:25922076, PubMed:29290465). The presence of selenocysteine (Sec) versus Cys at the active site is essential for life: it provides resistance to overoxidation and prevents cells against ferroptosis (PubMed:29290465). The presence of Sec at the active site is also essential for the survival of a specific type of parvalbumin-positive interneurons, thereby preventing against fatal epileptic seizures (PubMed:29290465). May be required to protect cells from the toxicity of ingested lipid hydroperoxides (PubMed:12566075). Required for normal sperm development and male fertility (PubMed:19783653, PubMed:25922076). Essential for maturation and survival of photoreceptor cells (PubMed:22207760). Plays a role in a primary T-cell response to viral and parasitic infection by protecting T-cells from ferroptosis and by supporting T-cell expansion (PubMed:25824823). Plays a role of glutathione peroxidase in platelets in the arachidonic acid metabolism (By similarity). Reduces hydroperoxy ester lipids formed by a 15-lipoxygenase that may play a role as down-regulator of the cellular 15-lipoxygenase pathway (By similarity).[UniProtKB:P36968][UniProtKB:P36969]<ref>PMID:12566075</ref> <ref>PMID:18762024</ref> <ref>PMID:19783653</ref> <ref>PMID:22207760</ref> <ref>PMID:24439385</ref> <ref>PMID:25402683</ref> <ref>PMID:25824823</ref> <ref>PMID:25922076</ref> <ref>PMID:29290465</ref> Specifically able to suppress the production of leukotriene and prostaglandin in response to several stimuli by reducing fatty acid hydroperoxide.[UniProtKB:P36970] Specifically required to prevent mitochondrial cell death by mediating reduction of cardiolipin hydroperoxide (By similarity). Also required for normal sperm development and male fertility (PubMed:19417079).[UniProtKB:P36970]<ref>PMID:19417079</ref> Required for male fertility by stabilizing the condensed chromatin in sperm nuclei (PubMed:12566075).<ref>PMID:12566075</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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</div>
</div>
<div class="pdbe-citations 5l71" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 5l71" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[Glutathione peroxidase|Glutathione peroxidase]]
== References ==
== References ==
<references/>
<references/>
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</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Lk3 transgenic mice]]
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[[Category: Mus musculus]]
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[[Category: Phospholipid-hydroperoxide glutathione peroxidase]]
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[[Category: Janowski R]]
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[[Category: Janowski, R]]
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[[Category: Madl T]]
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[[Category: Madl, T]]
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[[Category: Niessing D]]
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[[Category: Niessing, D]]
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[[Category: Scanu S]]
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[[Category: Scanu, S]]
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[[Category: Oxidoreductase]]
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[[Category: Selenocysteine]]
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Current revision

Crystal structure of mouse phospholipid hydroperoxide glutathione peroxidase 4 (GPx4)

PDB ID 5l71

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