1nbf

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
[[Image:1nbf.gif|left|200px]]
[[Image:1nbf.gif|left|200px]]
-
{{Structure
+
<!--
-
|PDB= 1nbf |SIZE=350|CAPTION= <scene name='initialview01'>1nbf</scene>, resolution 2.3&Aring;
+
The line below this paragraph, containing "STRUCTURE_1nbf", creates the "Structure Box" on the page.
-
|SITE=
+
You may change the PDB parameter (which sets the PDB file loaded into the applet)
-
|LIGAND= <scene name='pdbligand=GLZ:AMINO-ACETALDEHYDE'>GLZ</scene>
+
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Ubiquitin_thiolesterase Ubiquitin thiolesterase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.2.15 3.1.2.15] </span>
+
or leave the SCENE parameter empty for the default display.
-
|GENE= USP7 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens]), UBA52 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])
+
-->
-
|DOMAIN=
+
{{STRUCTURE_1nbf| PDB=1nbf | SCENE= }}
-
|RELATEDENTRY=[[1nb8|1NB8]]
+
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1nbf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1nbf OCA], [http://www.ebi.ac.uk/pdbsum/1nbf PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1nbf RCSB]</span>
+
-
}}
+
'''Crystal structure of a UBP-family deubiquitinating enzyme in isolation and in complex with ubiquitin aldehyde'''
'''Crystal structure of a UBP-family deubiquitinating enzyme in isolation and in complex with ubiquitin aldehyde'''
Line 35: Line 32:
[[Category: Wu, J W.]]
[[Category: Wu, J W.]]
[[Category: Yao, T.]]
[[Category: Yao, T.]]
-
[[Category: catalytic mechanisms of upb]]
+
[[Category: Catalytic mechanisms of upb]]
-
[[Category: deubiquitinating enzyme]]
+
[[Category: Deubiquitinating enzyme]]
-
[[Category: hausp]]
+
[[Category: Hausp]]
-
[[Category: ubiquitin binding]]
+
[[Category: Ubiquitin binding]]
-
 
+
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 02:19:52 2008''
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 22:28:01 2008''
+

Revision as of 23:19, 2 May 2008

Template:STRUCTURE 1nbf

Crystal structure of a UBP-family deubiquitinating enzyme in isolation and in complex with ubiquitin aldehyde


Overview

The ubiquitin-specific processing protease (UBP) family of deubiquitinating enzymes plays an essential role in numerous cellular processes. HAUSP, a representative UBP, specifically deubiquitinates and hence stabilizes the tumor suppressor protein p53. Here, we report the crystal structures of the 40 kDa catalytic core domain of HAUSP in isolation and in complex with ubiquitin aldehyde. These studies reveal that the UBP deubiquitinating enzymes exhibit a conserved three-domain architecture, comprising Fingers, Palm, and Thumb. The leaving ubiquitin moiety is specifically coordinated by the Fingers, with its C terminus placed in the active site between the Palm and the Thumb. Binding by ubiquitin aldehyde induces a drastic conformational change in the active site that realigns the catalytic triad residues for catalysis.

About this Structure

1NBF is a Protein complex structure of sequences from Homo sapiens. Full crystallographic information is available from OCA.

Reference

Crystal structure of a UBP-family deubiquitinating enzyme in isolation and in complex with ubiquitin aldehyde., Hu M, Li P, Li M, Li W, Yao T, Wu JW, Gu W, Cohen RE, Shi Y, Cell. 2002 Dec 27;111(7):1041-54. PMID:12507430 Page seeded by OCA on Sat May 3 02:19:52 2008

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools