This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


6dgm

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:05, 11 October 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='6dgm' size='340' side='right'caption='[[6dgm]], [[Resolution|resolution]] 1.49&Aring;' scene=''>
<StructureSection load='6dgm' size='340' side='right'caption='[[6dgm]], [[Resolution|resolution]] 1.49&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6dgm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Strpv Strpv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DGM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6DGM FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6dgm]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_pyogenes_MGAS5005 Streptococcus pyogenes MGAS5005]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DGM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6DGM FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=1GP:SN-GLYCEROL-1-PHOSPHATE'>1GP</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.49&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5u9z|5u9z]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1GP:SN-GLYCEROL-1-PHOSPHATE'>1GP</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SPy_0793 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=293653 STRPV])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6dgm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6dgm OCA], [https://pdbe.org/6dgm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6dgm RCSB], [https://www.ebi.ac.uk/pdbsum/6dgm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6dgm ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6dgm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6dgm OCA], [http://pdbe.org/6dgm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6dgm RCSB], [http://www.ebi.ac.uk/pdbsum/6dgm PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6dgm ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q48UA4_STRPM Q48UA4_STRPM]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 23: Line 24:
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Strpv]]
+
[[Category: Streptococcus pyogenes MGAS5005]]
-
[[Category: Edgar, R J]]
+
[[Category: Edgar RJ]]
-
[[Category: Korotkov, K V]]
+
[[Category: Korotkov KV]]
-
[[Category: Korotkova, N]]
+
[[Category: Korotkova N]]
-
[[Category: D-glycerol-3-phosphate]]
+
-
[[Category: Glycero-1-phosphate]]
+
-
[[Category: L-glycerol 1-phosphate]]
+
-
[[Category: Lancefield group a carbohydrate]]
+
-
[[Category: Transferase]]
+

Current revision

Streptococcus pyogenes phosphoglycerol transferase GacH in complex with sn-glycerol-1-phosphate

PDB ID 6dgm

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/6dgm"
Personal tools