This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


6dnt

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:10, 11 October 2023) (edit) (undo)
 
Line 1: Line 1:
==UDP-N-acetylglucosamine 4-epimerase from Methanobrevibacter ruminantium M1 in complex with UDP-N-acetylmuramic acid==
==UDP-N-acetylglucosamine 4-epimerase from Methanobrevibacter ruminantium M1 in complex with UDP-N-acetylmuramic acid==
-
<StructureSection load='6dnt' size='340' side='right' caption='[[6dnt]], [[Resolution|resolution]] 1.66&Aring;' scene=''>
+
<StructureSection load='6dnt' size='340' side='right'caption='[[6dnt]], [[Resolution|resolution]] 1.66&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6dnt]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Metrm Metrm]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DNT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6DNT FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6dnt]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanobrevibacter_ruminantium_M1 Methanobrevibacter ruminantium M1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DNT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6DNT FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=EPZ:(2R)-2-{[(2R,3R,4R,5S,6R)-3-(ACETYLAMINO)-2-{[(S)-{[(R)-{[(2R,3S,4R,5R)-5-(2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHOXY}(HYDROXY)PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-5-HYDROXY-6-(HYDROXYMETHYL)TETRAHYDRO-2H-PYRAN-4-YL]OXY}PROPANOIC+ACID'>EPZ</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.66&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">mru_1413 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=634498 METRM])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=EPZ:(2R)-2-{[(2R,3R,4R,5S,6R)-3-(ACETYLAMINO)-2-{[(S)-{[(R)-{[(2R,3S,4R,5R)-5-(2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHOXY}(HYDROXY)PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-5-HYDROXY-6-(HYDROXYMETHYL)TETRAHYDRO-2H-PYRAN-4-YL]OXY}PROPANOIC+ACID'>EPZ</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6dnt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6dnt OCA], [http://pdbe.org/6dnt PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6dnt RCSB], [http://www.ebi.ac.uk/pdbsum/6dnt PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6dnt ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6dnt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6dnt OCA], [https://pdbe.org/6dnt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6dnt RCSB], [https://www.ebi.ac.uk/pdbsum/6dnt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6dnt ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/D3E402_METRM D3E402_METRM]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 21: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Metrm]]
+
[[Category: Large Structures]]
-
[[Category: Carbone, V]]
+
[[Category: Methanobrevibacter ruminantium M1]]
-
[[Category: Ronimus, R S]]
+
[[Category: Carbone V]]
-
[[Category: Sang, C]]
+
[[Category: Ronimus RS]]
-
[[Category: Schofield, L R]]
+
[[Category: Sang C]]
-
[[Category: Sutherland-Smith, A J]]
+
[[Category: Schofield LR]]
-
[[Category: 4-epimerase]]
+
[[Category: Sutherland-Smith AJ]]
-
[[Category: Sugar binding protein]]
+
-
[[Category: Udp-n-acetylglucosamine]]
+
-
[[Category: Udp-n-acetylmuramic acid]]
+
-
[[Category: Wbpp]]
+

Current revision

UDP-N-acetylglucosamine 4-epimerase from Methanobrevibacter ruminantium M1 in complex with UDP-N-acetylmuramic acid

PDB ID 6dnt

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/6dnt"
Personal tools