6n9n
From Proteopedia
(Difference between revisions)
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<StructureSection load='6n9n' size='340' side='right'caption='[[6n9n]], [[Resolution|resolution]] 3.30Å' scene=''> | <StructureSection load='6n9n' size='340' side='right'caption='[[6n9n]], [[Resolution|resolution]] 3.30Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[6n9n]] is a 2 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[6n9n]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6N9N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6N9N FirstGlance]. <br> |
- | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.3Å</td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6n9n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6n9n OCA], [https://pdbe.org/6n9n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6n9n RCSB], [https://www.ebi.ac.uk/pdbsum/6n9n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6n9n ProSAT]</span></td></tr> |
</table> | </table> | ||
== Function == | == Function == | ||
- | [ | + | [https://www.uniprot.org/uniprot/GSDMD_MOUSE GSDMD_MOUSE] Gasdermin-D, N-terminal: Promotes pyroptosis in response to microbial infection and danger signals. Produced by the cleavage of gasdermin-D by inflammatory caspases CASP1 or CASP4 in response to canonical, as well as non-canonical (such as cytosolic LPS) inflammasome activators (PubMed:26611636, PubMed:26375259, PubMed:26375003, PubMed:27418190, PubMed:27385778, PubMed:27383986). After cleavage, moves to the plasma membrane where it strongly binds to membrane inner leaflet lipids, including monophosphorylated phosphatidylinositols, such as phosphatidylinositol 4-phosphate, bisphosphorylated phosphatidylinositols, such as phosphatidylinositol (4,5)-bisphosphate, as well as phosphatidylinositol (3,4,5)-trisphosphate, and more weakly to phosphatidic acid and phosphatidylserine. Homooligomerizes within the membrane and forms pores of 10 - 15 nanometers (nm) of inner diameter, allowing the release of mature IL1B and triggering pyroptosis. Exhibits bactericidal activity. Gasdermin-D, N-terminal released from pyroptotic cells into the extracellular milieu rapidly binds to and kills both Gram-negative and Gram-positive bacteria, without harming neighboring mammalian cells, as it does not disrupt the plasma membrane from the outside due to lipid-binding specificity. Under cell culture conditions, also active against intracellular bacteria, such as Listeria monocytogenes. Strongly binds to bacterial and mitochondrial lipids, including cardiolipin. Does not bind to phosphatidylethanolamine or phosphatidylcholine (PubMed:27383986).<ref>PMID:26375003</ref> <ref>PMID:26375259</ref> <ref>PMID:26611636</ref> <ref>PMID:27383986</ref> <ref>PMID:27385778</ref> <ref>PMID:27418190</ref> |
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
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</div> | </div> | ||
<div class="pdbe-citations 6n9n" style="background-color:#fffaf0;"></div> | <div class="pdbe-citations 6n9n" style="background-color:#fffaf0;"></div> | ||
+ | |||
+ | ==See Also== | ||
+ | *[[Gasdermin 3D structures|Gasdermin 3D structures]] | ||
== References == | == References == | ||
<references/> | <references/> | ||
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</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: | + | [[Category: Mus musculus]] |
- | [[Category: Liu | + | [[Category: Liu Z]] |
- | [[Category: Wang | + | [[Category: Wang C]] |
- | [[Category: Xiao | + | [[Category: Xiao TS]] |
- | [[Category: Yang | + | [[Category: Yang J]] |
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Current revision
Crystal structure of murine GSDMD
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Categories: Large Structures | Mus musculus | Liu Z | Wang C | Xiao TS | Yang J