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| | <StructureSection load='6nee' size='340' side='right'caption='[[6nee]], [[Resolution|resolution]] 1.90Å' scene=''> | | <StructureSection load='6nee' size='340' side='right'caption='[[6nee]], [[Resolution|resolution]] 1.90Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[6nee]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Synthetic_construct_sequences Synthetic construct sequences]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6NEE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6NEE FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6nee]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6NEE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6NEE FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PGH:PHOSPHOGLYCOLOHYDROXAMIC+ACID'>PGH</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9Å</td></tr> |
| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Triose-phosphate_isomerase Triose-phosphate isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.1 5.3.1.1] </span></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PGH:PHOSPHOGLYCOLOHYDROXAMIC+ACID'>PGH</scene></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6nee FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6nee OCA], [http://pdbe.org/6nee PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6nee RCSB], [http://www.ebi.ac.uk/pdbsum/6nee PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6nee ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6nee FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6nee OCA], [https://pdbe.org/6nee PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6nee RCSB], [https://www.ebi.ac.uk/pdbsum/6nee PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6nee ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
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| | </div> | | </div> |
| | <div class="pdbe-citations 6nee" style="background-color:#fffaf0;"></div> | | <div class="pdbe-citations 6nee" style="background-color:#fffaf0;"></div> |
| | + | |
| | + | ==See Also== |
| | + | *[[Triose phosphate isomerase 3D structures|Triose phosphate isomerase 3D structures]] |
| | == References == | | == References == |
| | <references/> | | <references/> |
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| | </StructureSection> | | </StructureSection> |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Synthetic construct sequences]] | + | [[Category: Synthetic construct]] |
| - | [[Category: Triose-phosphate isomerase]]
| + | [[Category: Fernandez-Velasco DA]] |
| - | [[Category: Fernandez-Velasco, D A]] | + | [[Category: Rodriguez-Romero A]] |
| - | [[Category: Rodriguez-Romero, A]] | + | [[Category: Schulte-Sasse M]] |
| - | [[Category: Schulte-Sasse, M]] | + | |
| - | [[Category: Ancestral sequence reconstruction]]
| + | |
| - | [[Category: Glycolisis]]
| + | |
| - | [[Category: Isomerase]]
| + | |
| - | [[Category: Tim barrel]]
| + | |
| Structural highlights
Publication Abstract from PubMed
Function, structure and stability are strongly coupled in obligated oligomers, such as Triosephosphate Isomerase (TIM). However, little is known about how this coupling evolved. To address this question, five ancestral TIMs (ancTIMs) in the opisthokont lineage were inferred. The encoded proteins were purified and characterized, and spectroscopic and hydrodynamic analysis indicated that all are folded dimers. The catalytic efficiency of ancTIMs is very high and all dissociate into inactive and partially unfolded monomers. The placement of catalytic residues in the three-dimensional structure, as well as the enthalpy-driven binding signature of the oldest ancestor (TIM63) resemble extant TIMs. Although TIM63 dimers dissociate more readily than do extant TIMs, calorimetric data show that the free ancestral subunits are folded to a greater extent than their extant counterparts are, suggesting that full catalytic proficiency was established in the dimer before the stability of the isolated monomer eroded. Notably, the low association energy in ancTIMs is compensated for by a high activation barrier, and by a significant shift in the dimer-monomer equilibrium induced by ligand binding. Our results indicate that before the animal and fungi lineages diverged, TIM was an obligated oligomer with substrate binding properties and catalytic efficiency that resemble that of extant TIMs. Therefore, TIM function and association have been strongly coupled at least for the last third of biological evolution on earth. This article is protected by copyright. All rights reserved.
Structural, thermodynamic and catalytic characterization of an ancestral triosephosphate isomerase reveal early evolutionary coupling between monomer association and function.,Schulte-Sasse M, Pardo-Avila F, Pulido-Mayoral NO, Vazquez-Lobo A, Costas M, Garcia-Hernandez E, Rodriguez-Romero A, Fernandez-Velasco DA FEBS J. 2018 Dec 27. doi: 10.1111/febs.14741. PMID:30589511[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Schulte-Sasse M, Pardo-Avila F, Pulido-Mayoral NO, Vazquez-Lobo A, Costas M, Garcia-Hernandez E, Rodriguez-Romero A, Fernandez-Velasco DA. Structural, thermodynamic and catalytic characterization of an ancestral triosephosphate isomerase reveal early evolutionary coupling between monomer association and function. FEBS J. 2018 Dec 27. doi: 10.1111/febs.14741. PMID:30589511 doi:http://dx.doi.org/10.1111/febs.14741
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