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| <StructureSection load='6nr6' size='340' side='right'caption='[[6nr6]], [[Resolution|resolution]] 1.90Å' scene=''> | | <StructureSection load='6nr6' size='340' side='right'caption='[[6nr6]], [[Resolution|resolution]] 1.90Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[6nr6]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Ccug_49543 Ccug 49543]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6NR6 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6NR6 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6nr6]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_pseudintermedius Staphylococcus pseudintermedius]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6NR6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6NR6 FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9Å</td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[5ujd|5ujd]]</div></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">sbnI, DD902_02060, DD924_03760, DV946_04660, DV961_07520 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=283734 CCUG 49543])</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6nr6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6nr6 OCA], [https://pdbe.org/6nr6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6nr6 RCSB], [https://www.ebi.ac.uk/pdbsum/6nr6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6nr6 ProSAT]</span></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6nr6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6nr6 OCA], [http://pdbe.org/6nr6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6nr6 RCSB], [http://www.ebi.ac.uk/pdbsum/6nr6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6nr6 ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/A0A166Q2C7_STAPS A0A166Q2C7_STAPS] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Ccug 49543]] | |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Heinrichs, D E]] | + | [[Category: Staphylococcus pseudintermedius]] |
- | [[Category: Kobylarz, M J]] | + | [[Category: Heinrichs DE]] |
- | [[Category: Laakso, H A]] | + | [[Category: Kobylarz MJ]] |
- | [[Category: Loutet, S A]] | + | [[Category: Laakso HA]] |
- | [[Category: Morales, L D]] | + | [[Category: Loutet SA]] |
- | [[Category: Murphy, M E.P]] | + | [[Category: Morales LD]] |
- | [[Category: Verstraete, M M]] | + | [[Category: Murphy MEP]] |
- | [[Category: Biosynthetic protein]]
| + | [[Category: Verstraete MM]] |
- | [[Category: Free serine kinase]]
| + | |
- | [[Category: Parb/srx family]]
| + | |
- | [[Category: Siderophore]]
| + | |
- | [[Category: Staphyloferrin b]]
| + | |
| Structural highlights
Function
A0A166Q2C7_STAPS
Publication Abstract from PubMed
Staphylococcus aureus infection relies on iron acquisition from its host. S. aureus takes up iron through heme uptake by the iron-responsive surface determinant (Isd) system and by the production of iron-scavenging siderophores. Staphyloferrin B (SB) is a siderophore produced by the 9-gene sbn gene cluster for SB biosynthesis and efflux. Recently, the ninth gene product, SbnI, was determined to be a free l-serine kinase that produces O-phospho-l-serine (OPS), a substrate for SB biosynthesis. Previous studies have also characterized SbnI as a DNA-binding regulatory protein that senses heme to control sbn gene expression for SB synthesis. Here, we present crystal structures at 1.9-2.1 A resolution of a SbnI homolog from Staphylococcus pseudintermedius (SpSbnI) in both apo form and in complex with ADP, a product of the kinase reaction; the latter confirmed the active-site location. The structures revealed that SpSbnI forms a dimer through C-terminal domain swapping and a dimer of dimers through intermolecular disulfide formation. Heme binding had only a modest effect on SbnI enzymatic activity, suggesting that its two functions are independent and structurally distinct. We identified a heme-binding site and observed catalytic heme transfer between a heme-degrading protein of the Isd system, IsdI, and SbnI. These findings support the notion that SbnI has a bifunctional role contributing precursor OPS to SB synthesis and directly sensing heme to control expression of the sbn locus. We propose that heme transfer from IsdI to SbnI enables S. aureus to control iron source preference according to the sources available in the environment.
The heme-sensitive regulator SbnI has a bifunctional role in staphyloferrin B production by Staphylococcus aureus.,Verstraete MM, Morales LD, Kobylarz MJ, Loutet SA, Laakso HA, Pinter TB, Stillman MJ, Heinrichs DE, Murphy MEP J Biol Chem. 2019 Jul 26;294(30):11622-11636. doi: 10.1074/jbc.RA119.007757. Epub, 2019 Jun 13. PMID:31197035[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Verstraete MM, Morales LD, Kobylarz MJ, Loutet SA, Laakso HA, Pinter TB, Stillman MJ, Heinrichs DE, Murphy MEP. The heme-sensitive regulator SbnI has a bifunctional role in staphyloferrin B production by Staphylococcus aureus. J Biol Chem. 2019 Jul 26;294(30):11622-11636. doi: 10.1074/jbc.RA119.007757. Epub, 2019 Jun 13. PMID:31197035 doi:http://dx.doi.org/10.1074/jbc.RA119.007757
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