|
|
| Line 3: |
Line 3: |
| | <StructureSection load='6nxv' size='340' side='right'caption='[[6nxv]], [[Resolution|resolution]] 2.75Å' scene=''> | | <StructureSection load='6nxv' size='340' side='right'caption='[[6nxv]], [[Resolution|resolution]] 2.75Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[6nxv]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Xanac Xanac]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6NXV OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6NXV FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6nxv]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Xanthomonas_citri_pv._citri_str._306 Xanthomonas citri pv. citri str. 306]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6NXV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6NXV FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.75Å</td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[6nv6|6nv6]], [[2c3n|2c3n]], [[4mpg|4mpg]], [[4hk7|4hk7]]</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">gst, XAC3819 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=190486 XANAC])</td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6nxv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6nxv OCA], [https://pdbe.org/6nxv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6nxv RCSB], [https://www.ebi.ac.uk/pdbsum/6nxv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6nxv ProSAT]</span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6nxv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6nxv OCA], [http://pdbe.org/6nxv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6nxv RCSB], [http://www.ebi.ac.uk/pdbsum/6nxv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6nxv ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/Q8PG02_XANAC Q8PG02_XANAC] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
| Line 18: |
Line 19: |
| | </div> | | </div> |
| | <div class="pdbe-citations 6nxv" style="background-color:#fffaf0;"></div> | | <div class="pdbe-citations 6nxv" style="background-color:#fffaf0;"></div> |
| | + | |
| | + | ==See Also== |
| | + | *[[Glutathione S-transferase 3D structures|Glutathione S-transferase 3D structures]] |
| | == References == | | == References == |
| | <references/> | | <references/> |
| Line 23: |
Line 27: |
| | </StructureSection> | | </StructureSection> |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Xanac]] | + | [[Category: Xanthomonas citri pv. citri str. 306]] |
| - | [[Category: Fan, L]]
| + | [[Category: De Keyser S]] |
| - | [[Category: Hilario, E]]
| + | [[Category: Fan L]] |
| - | [[Category: Keyser, S De]] | + | [[Category: Hilario E]] |
| - | [[Category: Citrus canker]] | + | |
| - | [[Category: Dehalogenase]] | + | |
| - | [[Category: Glutathione s-transferase]]
| + | |
| - | [[Category: Plant pathogen]]
| + | |
| - | [[Category: Theta class gst]]
| + | |
| - | [[Category: Transferase]]
| + | |
| Structural highlights
Function
Q8PG02_XANAC
Publication Abstract from PubMed
The genus Xanthomonas comprises several cosmopolitan plant-pathogenic bacteria that affect more than 400 plant species, most of which are of economic interest. Citrus canker is a bacterial disease that affects citrus species, reducing fruit yield and quality, and is caused by the bacterium Xanthomonas citri subsp. citri (Xac). The Xac3819 gene, which has previously been reported to be important for citrus canker infection, encodes an uncharacterized glutathione S-transferase (GST) of 207 amino-acid residues in length (XacGST). Bacterial GSTs are implicated in a variety of metabolic processes such as protection against chemical and oxidative stresses. XacGST shares high sequence identity (45%) with the GstB dehalogenase from Escherichia coli O6:H1 strain CFT073 (EcGstB). Here, XacGST is reported to be able to conjugate glutathione (GSH) with bromoacetate with a Km of 6.67 +/- 0.77 mM, a kcat of 42.69 +/- 0.32 s(-1) and a kcat/Km of 6.40 +/- 0.72 mM(-1) s(-1) under a saturated GSH concentration (3.6 mM). These values are comparable to those previously reported for EcGstB. In addition, crystal structures of XacGST were determined in the apo form (PDB entry 6nxv) and in a GSH-bound complex (PDB entry 6nv6). XacGST has a canonical GST-like fold with a conserved serine residue (Ser12) at the GSH-binding site near the N-terminus, indicating XacGST to be a serine-type GST that probably belongs to the theta-class GSTs. GSH binding stabilizes a loop of about 20 residues containing a helix that is disordered in the apo XacGST structure.
Structural and biochemical characterization of a glutathione transferase from the citrus canker pathogen Xanthomonas.,Hilario E, De Keyser S, Fan L Acta Crystallogr D Struct Biol. 2020 Aug 1;76(Pt 8):778-789. doi:, 10.1107/S2059798320009274. Epub 2020 Jul 27. PMID:32744260[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Hilario E, De Keyser S, Fan L. Structural and biochemical characterization of a glutathione transferase from the citrus canker pathogen Xanthomonas. Acta Crystallogr D Struct Biol. 2020 Aug 1;76(Pt 8):778-789. doi:, 10.1107/S2059798320009274. Epub 2020 Jul 27. PMID:32744260 doi:http://dx.doi.org/10.1107/S2059798320009274
|
