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| | <StructureSection load='6ny9' size='340' side='right'caption='[[6ny9]], [[Resolution|resolution]] 1.66Å' scene=''> | | <StructureSection load='6ny9' size='340' side='right'caption='[[6ny9]], [[Resolution|resolution]] 1.66Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[6ny9]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6NY9 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6NY9 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6ny9]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6NY9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6NY9 FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=SR:STRONTIUM+ION'>SR</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.66Å</td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Abhd10 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 LK3 transgenic mice])</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=SR:STRONTIUM+ION'>SR</scene></td></tr> |
| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Mycophenolic_acid_acyl-glucuronide_esterase Mycophenolic acid acyl-glucuronide esterase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.93 3.1.1.93] </span></td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6ny9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ny9 OCA], [https://pdbe.org/6ny9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6ny9 RCSB], [https://www.ebi.ac.uk/pdbsum/6ny9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6ny9 ProSAT]</span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6ny9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ny9 OCA], [http://pdbe.org/6ny9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6ny9 RCSB], [http://www.ebi.ac.uk/pdbsum/6ny9 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6ny9 ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/ABHDA_MOUSE ABHDA_MOUSE] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | </StructureSection> | | </StructureSection> |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Lk3 transgenic mice]] | + | [[Category: Mus musculus]] |
| - | [[Category: Mycophenolic acid acyl-glucuronide esterase]]
| + | [[Category: Cao Y]] |
| - | [[Category: Cao, Y]] | + | [[Category: Dickinson BC]] |
| - | [[Category: Dickinson, B C]] | + | [[Category: Rice PA]] |
| - | [[Category: Rice, P A]] | + | |
| - | [[Category: Alpha/beta hydrolase]]
| + | |
| - | [[Category: Depalmitoylase]]
| + | |
| - | [[Category: Hydrolase]]
| + | |
| - | [[Category: Mitochondria]]
| + | |
| Structural highlights
Function
ABHDA_MOUSE
Publication Abstract from PubMed
S-Palmitoylation is a reversible lipid post-translational modification that has been observed on mitochondrial proteins, but both the regulation and functional consequences of mitochondrial S-palmitoylation are poorly understood. Here, we show that perturbing the 'erasers' of S-palmitoylation, acyl protein thioesterases (APTs), with either pan-active inhibitors or a mitochondrial-targeted APT inhibitor, diminishes the antioxidant buffering capacity of mitochondria. Surprisingly, this effect was not mediated by the only known mitochondrial APT, but rather by a resident mitochondrial protein with no known endogenous function, ABHD10. We show that ABHD10 is a member of the APT family of regulatory proteins and identify peroxiredoxin-5 (PRDX5), a key antioxidant protein, as a target of ABHD10 S-depalmitoylase activity. We then find that ABHD10 regulates the S-palmitoylation status of the nucleophilic active site residue of PRDX5, providing a direct mechanistic connection between ABHD10-mediated S-depalmitoylation of PRDX5 and its antioxidant capacity.
ABHD10 is an S-depalmitoylase affecting redox homeostasis through peroxiredoxin-5.,Cao Y, Qiu T, Kathayat RS, Azizi SA, Thorne AK, Ahn D, Fukata Y, Fukata M, Rice PA, Dickinson BC Nat Chem Biol. 2019 Dec;15(12):1232-1240. doi: 10.1038/s41589-019-0399-y. Epub, 2019 Nov 18. PMID:31740833[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Cao Y, Qiu T, Kathayat RS, Azizi SA, Thorne AK, Ahn D, Fukata Y, Fukata M, Rice PA, Dickinson BC. ABHD10 is an S-depalmitoylase affecting redox homeostasis through peroxiredoxin-5. Nat Chem Biol. 2019 Dec;15(12):1232-1240. doi: 10.1038/s41589-019-0399-y. Epub, 2019 Nov 18. PMID:31740833 doi:http://dx.doi.org/10.1038/s41589-019-0399-y
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