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| | <StructureSection load='6pi5' size='340' side='right'caption='[[6pi5]], [[Resolution|resolution]] 1.67Å' scene=''> | | <StructureSection load='6pi5' size='340' side='right'caption='[[6pi5]], [[Resolution|resolution]] 1.67Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[6pi5]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Psesd Psesd]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6PI5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6PI5 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6pi5]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_sp._ADP Pseudomonas sp. ADP]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6PI5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6PI5 FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene>, <scene name='pdbligand=GUN:GUANINE'>GUN</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.67Å</td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">orf97, AOX63_31690 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=47660 PSESD])</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene>, <scene name='pdbligand=GUN:GUANINE'>GUN</scene></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6pi5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6pi5 OCA], [http://pdbe.org/6pi5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6pi5 RCSB], [http://www.ebi.ac.uk/pdbsum/6pi5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6pi5 ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6pi5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6pi5 OCA], [https://pdbe.org/6pi5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6pi5 RCSB], [https://www.ebi.ac.uk/pdbsum/6pi5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6pi5 ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/Q936X6_PSESD Q936X6_PSESD] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | </StructureSection> | | </StructureSection> |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Psesd]] | + | [[Category: Pseudomonas sp. ADP]] |
| - | [[Category: Dennis, M]] | + | [[Category: Dennis M]] |
| - | [[Category: Esquirol, L]] | + | [[Category: Esquirol L]] |
| - | [[Category: Nebl, T]] | + | [[Category: Nebl T]] |
| - | [[Category: Newman, J]] | + | [[Category: Newman J]] |
| - | [[Category: Peat, T S]] | + | [[Category: Peat TS]] |
| - | [[Category: Scott, C]] | + | [[Category: Scott C]] |
| - | [[Category: Evolution from purine binding to atrazine binding]]
| + | |
| - | [[Category: Periplasmic binding protein]]
| + | |
| - | [[Category: Sad phasing]]
| + | |
| - | [[Category: Transport protein]]
| + | |
| Structural highlights
Function
Q936X6_PSESD
Publication Abstract from PubMed
Atrazine is an s-triazine-based herbicide that is used in many countries around the world in many millions of tons per year. A small number of organisms, such as Pseudomonas sp. strain ADP, have evolved to use this modified s-triazine as a food source, and the various genes required to metabolize atrazine can be found on a single plasmid. The atomic structures of seven of the eight proteins involved in the breakdown of atrazine by Pseudomonas sp. strain ADP have been determined by X-ray crystallography, but the structures of the proteins required by the cell to import atrazine for use as an energy source are still lacking. The structure of AtzT, a periplasmic binding protein that may be involved in the transport of a derivative of atrazine, 2-hydroxyatrazine, into the cell for mineralization, has now been determined. The structure was determined by SAD phasing using an ethylmercury phosphate derivative that diffracted X-rays to beyond 1.9 A resolution. `Native' (guanine-bound) and 2-hydroxyatrazine-bound structures were also determined to high resolution (1.67 and 1.65 A, respectively), showing that 2-hydroxyatrazine binds in a similar way to the purportedly native ligand. Structural similarities led to the belief that it may be possible to evolve AtzT from a purine-binding protein to a protein that can bind and detect atrazine in the environment.
The evolving story of AtzT, a periplasmic binding protein.,Dennis ML, Esquirol L, Nebl T, Newman J, Scott C, Peat TS Acta Crystallogr D Struct Biol. 2019 Nov 1;75(Pt 11):995-1002. doi:, 10.1107/S2059798319013883. Epub 2019 Oct 31. PMID:31692473[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Dennis ML, Esquirol L, Nebl T, Newman J, Scott C, Peat TS. The evolving story of AtzT, a periplasmic binding protein. Acta Crystallogr D Struct Biol. 2019 Nov 1;75(Pt 11):995-1002. doi:, 10.1107/S2059798319013883. Epub 2019 Oct 31. PMID:31692473 doi:http://dx.doi.org/10.1107/S2059798319013883
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