6u0o

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:41, 11 October 2023) (edit) (undo)
 
Line 1: Line 1:
-
====
+
==Crystal structure of a peptidoglycan release complex, SagB-SpdC, in lipidic cubic phase==
-
<StructureSection load='6u0o' size='340' side='right'caption='[[6u0o]]' scene=''>
+
<StructureSection load='6u0o' size='340' side='right'caption='[[6u0o]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6u0o]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus_RF122 Staphylococcus aureus RF122], [https://en.wikipedia.org/wiki/Staphylococcus_aureus_subsp._aureus_NCTC_8325 Staphylococcus aureus subsp. aureus NCTC 8325] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6U0O OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6U0O FirstGlance]. <br>
-
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6u0o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6u0o OCA], [http://pdbe.org/6u0o PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6u0o RCSB], [http://www.ebi.ac.uk/pdbsum/6u0o PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6u0o ProSAT]</span></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AE3:2-(2-ETHOXYETHOXY)ETHANOL'>AE3</scene>, <scene name='pdbligand=FLC:CITRATE+ANION'>FLC</scene>, <scene name='pdbligand=OLC:(2R)-2,3-DIHYDROXYPROPYL+(9Z)-OCTADEC-9-ENOATE'>OLC</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6u0o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6u0o OCA], [https://pdbe.org/6u0o PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6u0o RCSB], [https://www.ebi.ac.uk/pdbsum/6u0o PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6u0o ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/LYRA_STAAB LYRA_STAAB]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Bacteria are encapsulated by a peptidoglycan cell wall that is essential for their survival(1). During cell wall assembly, a lipid-linked disaccharide-peptide precursor called lipid II is polymerized and cross-linked to produce mature peptidoglycan. As lipid II is polymerized, nascent polymers remain membrane-anchored at one end, and the other end becomes cross-linked to the matrix(2-4). How bacteria release newly synthesized peptidoglycan strands from the membrane to complete the synthesis of mature peptidoglycan is a long-standing question. Here, we show that a Staphylococcus aureus cell wall hydrolase and a membrane protein that contains eight transmembrane helices form a complex that may function as a peptidoglycan release factor. The complex cleaves nascent peptidoglycan internally to produce free oligomers as well as lipid-linked oligomers that can undergo further elongation. The polytopic membrane protein, which is similar to a eukaryotic CAAX protease, controls the length of these products. A structure of the complex at a resolution of 2.6 A shows that the membrane protein scaffolds the hydrolase to orient its active site for cleaving the glycan strand. We propose that this complex functions to detach newly synthesized peptidoglycan polymer from the cell membrane to complete integration into the cell wall matrix.
 +
 +
Structure and reconstitution of a hydrolase complex that may release peptidoglycan from the membrane after polymerization.,Schaefer K, Owens TW, Page JE, Santiago M, Kahne D, Walker S Nat Microbiol. 2020 Nov 9. pii: 10.1038/s41564-020-00808-5. doi:, 10.1038/s41564-020-00808-5. PMID:33168989<ref>PMID:33168989</ref>
 +
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 6u0o" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Z-disk]]
+
[[Category: Staphylococcus aureus RF122]]
 +
[[Category: Staphylococcus aureus subsp. aureus NCTC 8325]]
 +
[[Category: Synthetic construct]]
 +
[[Category: Kahne D]]
 +
[[Category: Owens TW]]
 +
[[Category: Schaefer K]]
 +
[[Category: Walker S]]

Current revision

Crystal structure of a peptidoglycan release complex, SagB-SpdC, in lipidic cubic phase

PDB ID 6u0o

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools