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| <StructureSection load='6u7n' size='340' side='right'caption='[[6u7n]], [[Resolution|resolution]] 3.32Å' scene=''> | | <StructureSection load='6u7n' size='340' side='right'caption='[[6u7n]], [[Resolution|resolution]] 3.32Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[6u7n]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6U7N OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6U7N FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6u7n]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6U7N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6U7N FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.321Å</td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">NTM, IGLON2, NT, UNQ297/PRO337 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6u7n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6u7n OCA], [http://pdbe.org/6u7n PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6u7n RCSB], [http://www.ebi.ac.uk/pdbsum/6u7n PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6u7n ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6u7n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6u7n OCA], [https://pdbe.org/6u7n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6u7n RCSB], [https://www.ebi.ac.uk/pdbsum/6u7n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6u7n ProSAT]</span></td></tr> |
| </table> | | </table> |
| == Function == | | == Function == |
- | [[http://www.uniprot.org/uniprot/NTRI_HUMAN NTRI_HUMAN]] Neural cell adhesion molecule. | + | [https://www.uniprot.org/uniprot/NTRI_HUMAN NTRI_HUMAN] Neural cell adhesion molecule. |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Human]] | + | [[Category: Homo sapiens]] |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Machius, M]] | + | [[Category: Machius M]] |
- | [[Category: Misra, A]] | + | [[Category: Misra A]] |
- | [[Category: Rudenko, G]] | + | [[Category: Rudenko G]] |
- | [[Category: Rush, S]] | + | [[Category: Rush S]] |
- | [[Category: Venkannagari, H]] | + | [[Category: Venkannagari H]] |
- | [[Category: Cell adhesion]]
| + | |
- | [[Category: Ig domain-containing]]
| + | |
- | [[Category: Iglon]]
| + | |
- | [[Category: Synaptic organizer]]
| + | |
| Structural highlights
6u7n is a 1 chain structure with sequence from Homo sapiens. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
| Method: | X-ray diffraction, Resolution 3.321Å |
Ligands: | , , , , |
Resources: | FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT |
Function
NTRI_HUMAN Neural cell adhesion molecule.
Publication Abstract from PubMed
Neuronal growth regulator 1 (NEGR1) and neurotrimin (NTM) are abundant cell-surface proteins found in brain and form part of the IgLON (Immunoglobulin LSAMP, OBCAM, Neurotrimin) family. In humans, NEGR1 is implicated in obesity and mental disorders, while NTM is linked to intelligence and cognitive function. IgLONs dimerize homophilically and heterophilically, and they are thought to shape synaptic connections and neural circuits by acting in trans (spanning cellular junctions) and/or in cis (at the same side of a junction). Here, we reveal homodimeric structures of NEGR1 and NTM. They assemble into V-shaped complexes via their Ig1 domains, and disruption of the Ig1-Ig1 interface abolishes dimerization in solution. A hydrophobic ridge from one Ig1 domain inserts into a hydrophobic pocket from the opposing Ig1 domain producing an interaction interface that is highly conserved among IgLONs but remarkably plastic structurally. Given the high degree of sequence conservation at the interaction interface, we tested whether different IgLONs could elicit the same biological effect in vivo. In a small scale study, administering different soluble IgLONs directly into the brain and monitoring feeding, only NEGR1 altered food intake significantly. Taking NEGR1 as a prototype, our studies thus indicate that while IgLONs share a conserved mode of interaction and are able to bind each other as homomers and heteromers, they are structurally plastic and can exert unique biological action.
Highly Conserved Molecular Features in IgLONs Contrast their Distinct Structural and Biological Outcomes.,Venkannagari H, Kasper JM, Misra A, Rush SA, Fan S, Lee H, Sun H, Seshadrinathan S, Machius M, Hommel JD, Rudenko G J Mol Biol. 2020 Jul 22. pii: S0022-2836(20)30461-7. doi:, 10.1016/j.jmb.2020.07.014. PMID:32710982[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Venkannagari H, Kasper JM, Misra A, Rush SA, Fan S, Lee H, Sun H, Seshadrinathan S, Machius M, Hommel JD, Rudenko G. Highly Conserved Molecular Features in IgLONs Contrast their Distinct Structural and Biological Outcomes. J Mol Biol. 2020 Jul 22. pii: S0022-2836(20)30461-7. doi:, 10.1016/j.jmb.2020.07.014. PMID:32710982 doi:http://dx.doi.org/10.1016/j.jmb.2020.07.014
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