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| <StructureSection load='6v0k' size='340' side='right'caption='[[6v0k]], [[Resolution|resolution]] 2.41Å' scene=''> | | <StructureSection load='6v0k' size='340' side='right'caption='[[6v0k]], [[Resolution|resolution]] 2.41Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[6v0k]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_10513 Atcc 10513]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6V0K OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6V0K FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6v0k]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Talaromyces_verruculosus Talaromyces verruculosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6V0K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6V0K FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.41Å</td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PvCPS ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=198730 ATCC 10513])</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6v0k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6v0k OCA], [http://pdbe.org/6v0k PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6v0k RCSB], [http://www.ebi.ac.uk/pdbsum/6v0k PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6v0k ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6v0k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6v0k OCA], [https://pdbe.org/6v0k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6v0k RCSB], [https://www.ebi.ac.uk/pdbsum/6v0k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6v0k ProSAT]</span></td></tr> |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/PVCPS_TALVE PVCPS_TALVE] Bifunctional terpene synthase that possesses both prenyltransferase and type II terpene cyclase activity, converting isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) into geranylgeranyl diphosphate (GGPP) and further converting GGPP into copalyl diphosphate, respectively.<ref>PMID:28869716</ref> <ref>PMID:31978464</ref> |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Atcc 10513]] | |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Christianson, D W]] | + | [[Category: Talaromyces verruculosus]] |
- | [[Category: Ronnebaum, T A]] | + | [[Category: Christianson DW]] |
- | [[Category: Isoprenoid synthase]] | + | [[Category: Ronnebaum TA]] |
- | [[Category: Prenyltransferase]]
| + | |
- | [[Category: Transferase]]
| + | |
| Structural highlights
Function
PVCPS_TALVE Bifunctional terpene synthase that possesses both prenyltransferase and type II terpene cyclase activity, converting isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) into geranylgeranyl diphosphate (GGPP) and further converting GGPP into copalyl diphosphate, respectively.[1] [2]
Publication Abstract from PubMed
The unusual diterpene (C20) synthase copalyl diphosphate synthase from Penicillium verruculosum (PvCPS) is the first bifunctional terpene synthase identified with both prenyltransferase and class II cyclase activities in a single polypeptide chain with alphabetagamma domain architecture. The C-terminal prenyltransferase alphadomain generates geranylgeranyl diphosphate which is then cyclized to form copalyl diphosphate at the N-terminal betagamma domain interface. We now demonstrate that PvCPS exists as a hexamer at high concentrations - a unique quaternary structure for known alphabetagamma terpene synthases. Hexamer assembly is corroborated by a 2.41 A-resolution crystal structure of the alpha domain prenyltransferase obtained from limited proteolysis of full-length PvCPS, as well as the ab initio modeling of full-length PvCPS derived from small-angle X-ray scattering data. Hexamerization of the prenyltransferase alphadomain appears to drive the hexamerization of full-length PvCPS. The PvCPS hexamer dissociates into lower-order species at lower concentrations, as evidenced by size-exclusion chromatography in-line with multiangle light scattering, sedimentation velocity analytical ultracentrifugation, and native polyacrylamide gel electrophoresis experiments, suggesting that oligomerization is concentration dependent. Even so, PvCPS oligomer assembly does not affect prenyltransferase activity in vitro.
Higher-Order Oligomerization of a Chimeric alphabetagamma Bifunctional Diterpene Synthase with Prenyltransferase and Class II Cyclase Activities is Concentration-Dependent.,Ronnebaum TA, Gupta K, Christianson DW J Struct Biol. 2020 Jan 21:107463. doi: 10.1016/j.jsb.2020.107463. PMID:31978464[3]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Mitsuhashi T, Okada M, Abe I. Identification of Chimeric αβγ Diterpene Synthases Possessing both Type II Terpene Cyclase and Prenyltransferase Activities. Chembiochem. 2017 Nov 2;18(21):2104-2109. PMID:28869716 doi:10.1002/cbic.201700445
- ↑ Ronnebaum TA, Gupta K, Christianson DW. Higher-Order Oligomerization of a Chimeric alphabetagamma Bifunctional Diterpene Synthase with Prenyltransferase and Class II Cyclase Activities is Concentration-Dependent. J Struct Biol. 2020 Jan 21:107463. doi: 10.1016/j.jsb.2020.107463. PMID:31978464 doi:http://dx.doi.org/10.1016/j.jsb.2020.107463
- ↑ Ronnebaum TA, Gupta K, Christianson DW. Higher-Order Oligomerization of a Chimeric alphabetagamma Bifunctional Diterpene Synthase with Prenyltransferase and Class II Cyclase Activities is Concentration-Dependent. J Struct Biol. 2020 Jan 21:107463. doi: 10.1016/j.jsb.2020.107463. PMID:31978464 doi:http://dx.doi.org/10.1016/j.jsb.2020.107463
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