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6vgf

From Proteopedia

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Current revision (08:12, 11 October 2023) (edit) (undo)
 
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<StructureSection load='6vgf' size='340' side='right'caption='[[6vgf]], [[Resolution|resolution]] 1.83&Aring;' scene=''>
<StructureSection load='6vgf' size='340' side='right'caption='[[6vgf]], [[Resolution|resolution]] 1.83&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[6vgf]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Arachis_hypogaea Arachis hypogaea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6VGF OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6VGF FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6vgf]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Arachis_hypogaea Arachis hypogaea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6VGF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6VGF FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=WA3:(2S,3R,4S,5R,6S)-2-(hydroxymethyl)-6-{[(2S,3R,4S,5S,6S)-3,4,5-trihydroxy-6-({[(1-{[(2R,3S,4S,5R,6R)-3,4,5-trihydroxy-6-{[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-({4-[({[(2S,3S,4S,5R,6S)-3,4,5-trihydroxy-6-{[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl]sulfanyl}tetrahydro-2H-pyran-2-yl]methyl}sulfanyl)methyl]-1H-1,2,3-triazol-1-yl}methyl)tetrahydro-2H-pyran-2-yl]oxy}tetrahydro-2H-pyran-2-yl]methyl}-1H-1,2,3-triazol-4-yl)methyl]sulfanyl}methyl)tetrahydro-2H-pyran-2-yl]sulfanyl}tetrahydro-2H-pyran-3,4,5-triol'>WA3</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.83&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6vgf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6vgf OCA], [http://pdbe.org/6vgf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6vgf RCSB], [http://www.ebi.ac.uk/pdbsum/6vgf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6vgf ProSAT]</span></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=WA3:(2S,3R,4S,5R,6S)-2-(hydroxymethyl)-6-{[(2S,3R,4S,5S,6S)-3,4,5-trihydroxy-6-({[(1-{[(2R,3S,4S,5R,6R)-3,4,5-trihydroxy-6-{[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-({4-[({[(2S,3S,4S,5R,6S)-3,4,5-trihydroxy-6-{[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl]sulfanyl}tetrahydro-2H-pyran-2-yl]methyl}sulfanyl)methyl]-1H-1,2,3-triazol-1-yl}methyl)tetrahydro-2H-pyran-2-yl]oxy}tetrahydro-2H-pyran-2-yl]methyl}-1H-1,2,3-triazol-4-yl)methyl]sulfanyl}methyl)tetrahydro-2H-pyran-2-yl]sulfanyl}tetrahydro-2H-pyran-3,4,5-triol'>WA3</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6vgf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6vgf OCA], [https://pdbe.org/6vgf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6vgf RCSB], [https://www.ebi.ac.uk/pdbsum/6vgf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6vgf ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/LECG_ARAHY LECG_ARAHY]] D-galactose specific lectin.
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[https://www.uniprot.org/uniprot/LECG_ARAHY LECG_ARAHY] D-galactose specific lectin.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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</div>
</div>
<div class="pdbe-citations 6vgf" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 6vgf" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[Galactose-binding lectin|Galactose-binding lectin]]
== References ==
== References ==
<references/>
<references/>
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[[Category: Arachis hypogaea]]
[[Category: Arachis hypogaea]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Cagnoni, A J]]
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[[Category: Cagnoni AJ]]
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[[Category: Cano, M E]]
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[[Category: Cano ME]]
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[[Category: Goldbaum, F A]]
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[[Category: Goldbaum FA]]
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[[Category: Klinke, S]]
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[[Category: Klinke S]]
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[[Category: Otero, L H]]
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[[Category: Otero LH]]
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[[Category: Primo, E D]]
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[[Category: Primo ED]]
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[[Category: Uhrig, M L]]
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[[Category: Uhrig ML]]
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[[Category: Beta-galactosylamide]]
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[[Category: Beta-thiogalactoside]]
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[[Category: Glycomimetic]]
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[[Category: Peanut agglutinin]]
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[[Category: Sugar binding protein]]
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Current revision

Peanut lectin complexed with divalent S-beta-D-thiogalactopyranosyl beta-D-glucopyranoside derivative (diSTGD)

PDB ID 6vgf

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OCA

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