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| | <StructureSection load='6vhz' size='340' side='right'caption='[[6vhz]], [[Resolution|resolution]] 2.12Å' scene=''> | | <StructureSection load='6vhz' size='340' side='right'caption='[[6vhz]], [[Resolution|resolution]] 2.12Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[6vhz]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Klebsiella_oxytoca_10-5243 Klebsiella oxytoca 10-5243]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6VHZ OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6VHZ FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6vhz]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Klebsiella_oxytoca_10-5243 Klebsiella oxytoca 10-5243]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6VHZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6VHZ FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BR:BROMIDE+ION'>BR</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=QXP:5-{[(benzenecarbonyl)sulfamoyl]amino}-5-deoxyadenosine'>QXP</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.12Å</td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">NPSA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=883118 Klebsiella oxytoca 10-5243])</td></tr>
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BR:BROMIDE+ION'>BR</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=QXP:5-{[(benzenecarbonyl)sulfamoyl]amino}-5-deoxyadenosine'>QXP</scene></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6vhz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6vhz OCA], [http://pdbe.org/6vhz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6vhz RCSB], [http://www.ebi.ac.uk/pdbsum/6vhz PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6vhz ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6vhz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6vhz OCA], [https://pdbe.org/6vhz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6vhz RCSB], [https://www.ebi.ac.uk/pdbsum/6vhz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6vhz ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
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| | [[Category: Klebsiella oxytoca 10-5243]] | | [[Category: Klebsiella oxytoca 10-5243]] |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Gulick, A M]] | + | [[Category: Gulick AM]] |
| - | [[Category: Kreitler, D F]] | + | [[Category: Kreitler DF]] |
| - | [[Category: Adenylation]]
| + | |
| - | [[Category: Biosynthetic protein]]
| + | |
| - | [[Category: Nonribosomal peptide synthetase]]
| + | |
| - | [[Category: Nrp]]
| + | |
| - | [[Category: Tilimycin]]
| + | |
| - | [[Category: Tilivalline]]
| + | |
| Structural highlights
Publication Abstract from PubMed
Tilimycin is an enterotoxin produced by the opportunistic pathogen Klebsiella oxytoca that causes antibiotic-associated hemorrhagic colitis (AAHC). This pyrrolobenzodiazepine (PBD) natural product is synthesized by a bimodular nonribosomal peptide synthetase (NRPS) pathway composed of three proteins: NpsA, ThdA, and NpsB. We describe the functional and structural characterization of the fully reconstituted NRPS system and report the steady-state kinetic analysis of all natural substrates and cofactors as well as the structural characterization of both NpsA and ThdA. The mechanism of action of tilimycin was confirmed using DNA adductomics techniques through the detection of putative N-2 guanine alkylation after tilimycin exposure to eukaryotic cells, providing the first structural characterization of a PBD-DNA adduct formed in cells. Finally, we report the rational design of small-molecule inhibitors that block tilimycin biosynthesis in whole cell K. oxytoca (IC50 = 29 +/- 4 muM) through the inhibition of NpsA (KD = 29 +/- 4 nM).
Biosynthesis, Mechanism of Action, and Inhibition of the Enterotoxin Tilimycin Produced by the Opportunistic Pathogen Klebsiella oxytoca.,Alexander EM, Kreitler DF, Guidolin V, Hurben AK, Drake E, Villalta PW, Balbo S, Gulick AM, Aldrich CC ACS Infect Dis. 2020 Jun 24. doi: 10.1021/acsinfecdis.0c00326. PMID:32485104[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Alexander EM, Kreitler DF, Guidolin V, Hurben AK, Drake E, Villalta PW, Balbo S, Gulick AM, Aldrich CC. Biosynthesis, Mechanism of Action, and Inhibition of the Enterotoxin Tilimycin Produced by the Opportunistic Pathogen Klebsiella oxytoca. ACS Infect Dis. 2020 Jun 24. doi: 10.1021/acsinfecdis.0c00326. PMID:32485104 doi:http://dx.doi.org/10.1021/acsinfecdis.0c00326
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