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6vmx

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Current revision (08:15, 11 October 2023) (edit) (undo)
 
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==Structure of HD14 TCR in complex with HLA-B7 presenting an EBV epitope==
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<StructureSection load='6vmx' size='340' side='right'caption='[[6vmx]]' scene=''>
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<StructureSection load='6vmx' size='340' side='right'caption='[[6vmx]], [[Resolution|resolution]] 3.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6vmx]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Human_herpesvirus_4_strain_B95-8 Human herpesvirus 4 strain B95-8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6VMX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6VMX FirstGlance]. <br>
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6vmx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6vmx OCA], [http://pdbe.org/6vmx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6vmx RCSB], [http://www.ebi.ac.uk/pdbsum/6vmx PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6vmx ProSAT]</span></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.1&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6vmx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6vmx OCA], [https://pdbe.org/6vmx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6vmx RCSB], [https://www.ebi.ac.uk/pdbsum/6vmx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6vmx ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/EBNA3_EBVB9 EBNA3_EBVB9] Plays an essential role for activation and immortalization of human B-cells. Represses transcription of viral promoters TP1 and Cp through interaction with host RBPJ, and inhibits EBNA2-mediated activation of these promoters. Since Cp is the promoter for all EBNA mRNAs, EBNA3A probably contributes to a negative autoregulatory control loop.
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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EBV is one of the most common viruses found in humans and is prototypic of a persistent viral infection characterized by periods of latency. Across many HLA class I molecules, the latent-specific CD8(+) T cell response is focused on epitopes derived from the EBNA-3 protein family. In the case of HLA-B*07:02 restriction, a highly frequent class I allele, the T cell response is dominated by an epitope spanning residues 379-387 of EBNA-3 (RPPIFIRRL [EBVRPP]). However, little is known about either the TCR repertoire specific for this epitope or the molecular basis for this observed immunodominance. The EBVRPP CD8(+) T cell response was common among both EBV-seropositive HLA-B*07:02(+) healthy and immunocompromised individuals. Similar TCRs were identified in EBVRPP-specific CD8(+) T cell repertoires across multiple HLA-B7(+) individuals, indicating a shared Ag-driven bias in TCR usage. In particular, TRBV4-1 and TRAV38 usage was observed in five out of six individuals studied. In this study, we report the crystal structure of a TRBV4-1(+) TCR-HLA-B*07:02/EBVRPP complex, which provides a molecular basis for the observed TRBV4-1 bias. These findings enhance our understanding of the CD8(+) T cell response toward a common EBV determinant in HLA-B*07:02(+) individuals.
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A Shared TCR Bias toward an Immunogenic EBV Epitope Dominates in HLA-B*07:02-Expressing Individuals.,Rowntree LC, Nguyen THO, Farenc C, Halim H, Hensen L, Rossjohn J, Kotsimbos TC, Purcell AW, Kedzierska K, Gras S, Mifsud NA J Immunol. 2020 Sep 15;205(6):1524-1534. doi: 10.4049/jimmunol.2000249. Epub 2020, Aug 19. PMID:32817371<ref>PMID:32817371</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 6vmx" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[MHC 3D structures|MHC 3D structures]]
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*[[MHC I 3D structures|MHC I 3D structures]]
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== References ==
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<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Homo sapiens]]
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[[Category: Human herpesvirus 4 strain B95-8]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Z-disk]]
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[[Category: Farenc C]]
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[[Category: Gras S]]
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[[Category: Rossjohn J]]

Current revision

Structure of HD14 TCR in complex with HLA-B7 presenting an EBV epitope

PDB ID 6vmx

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