6vxc

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Current revision (08:22, 11 October 2023) (edit) (undo)
 
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<StructureSection load='6vxc' size='340' side='right'caption='[[6vxc]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
<StructureSection load='6vxc' size='340' side='right'caption='[[6vxc]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[6vxc]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6VXC OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6VXC FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6vxc]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridioides_difficile_70-100-2010 Clostridioides difficile 70-100-2010]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6VXC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6VXC FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.05&#8491;</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Trans-4-hydroxy-L-proline_dehydratase Trans-4-hydroxy-L-proline dehydratase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.172 4.2.1.172] </span></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6vxc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6vxc OCA], [http://pdbe.org/6vxc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6vxc RCSB], [http://www.ebi.ac.uk/pdbsum/6vxc PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6vxc ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6vxc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6vxc OCA], [https://pdbe.org/6vxc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6vxc RCSB], [https://www.ebi.ac.uk/pdbsum/6vxc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6vxc ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/HYPD_CLODI HYPD_CLODI]] Glycine radical enzyme that catalyzes the dehydration of the non-proteinogenic amino acid trans-4-hydroxy-L-proline (Hyp) to produce delta(1)-pyrroline-5-carboxylate (P5C). Is involved in the anaerobic degradation of 4-hydroxyproline.<ref>PMID:28183913</ref>
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[https://www.uniprot.org/uniprot/Q180C6_CLOD6 Q180C6_CLOD6]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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</div>
</div>
<div class="pdbe-citations 6vxc" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 6vxc" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[HypA%2C HypB%2C HypC%2C HypD%2C HypE and HypF 3D structures|HypA%2C HypB%2C HypC%2C HypD%2C HypE and HypF 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Clostridioides difficile 70-100-2010]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Trans-4-hydroxy-L-proline dehydratase]]
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[[Category: Backman LRF]]
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[[Category: Backman, L R.F]]
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[[Category: Drennan CL]]
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[[Category: Drennan, C L]]
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[[Category: Glycyl radical enzyme]]
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[[Category: Hydroxyproline dehydratase]]
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[[Category: Lyase]]
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Current revision

Crystal structure of hydroxyproline dehydratase (HypD) from Clostridioides difficile

PDB ID 6vxc

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