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3b04

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<StructureSection load='3b04' size='340' side='right'caption='[[3b04]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
<StructureSection load='3b04' size='340' side='right'caption='[[3b04]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3b04]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/'saccharolobus_shibatae' 'saccharolobus shibatae']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B04 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3B04 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3b04]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharolobus_shibatae Saccharolobus shibatae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B04 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3B04 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=OOP:1-DEOXY-1-[(4AR)-4A-[(2R)-1-HYDROXY-5-{[(S)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}-3-METHYLIDENEPENTAN-2-YL]-7,8-DIMETHYL-2,4-DIOXO-3,4,4A,5-TETRAHYDROBENZO[G]PTERIDIN-10(2H)-YL]-5-O-PHOSPHONO-D-RIBITOL'>OOP</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3b03|3b03]], [[3b05|3b05]], [[3b06|3b06]]</div></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=OOP:1-DEOXY-1-[(4AR)-4A-[(2R)-1-HYDROXY-5-{[(S)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}-3-METHYLIDENEPENTAN-2-YL]-7,8-DIMETHYL-2,4-DIOXO-3,4,4A,5-TETRAHYDROBENZO[G]PTERIDIN-10(2H)-YL]-5-O-PHOSPHONO-D-RIBITOL'>OOP</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">fni, idi ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2286 'Saccharolobus shibatae'])</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Isopentenyl-diphosphate_Delta-isomerase Isopentenyl-diphosphate Delta-isomerase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.3.2 5.3.3.2] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3b04 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3b04 OCA], [https://pdbe.org/3b04 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3b04 RCSB], [https://www.ebi.ac.uk/pdbsum/3b04 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3b04 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3b04 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3b04 OCA], [https://pdbe.org/3b04 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3b04 RCSB], [https://www.ebi.ac.uk/pdbsum/3b04 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3b04 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[https://www.uniprot.org/uniprot/IDI2_SULSH IDI2_SULSH]] Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP) (By similarity).
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[https://www.uniprot.org/uniprot/IDI2_SACSH IDI2_SACSH] Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).[HAMAP-Rule:MF_00354]<ref>PMID:19158086</ref> <ref>PMID:22158896</ref> <ref>PMID:22505674</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Saccharolobus shibatae]]
 
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[[Category: Isopentenyl-diphosphate Delta-isomerase]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Hemmi, H]]
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[[Category: Saccharolobus shibatae]]
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[[Category: Nagai, T]]
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[[Category: Hemmi H]]
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[[Category: Unno, H]]
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[[Category: Nagai T]]
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[[Category: Fmn]]
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[[Category: Unno H]]
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[[Category: Idi]]
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[[Category: Isomerase]]
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[[Category: Isopentenyl diphosphate isomerase]]
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[[Category: Oipp]]
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[[Category: Type 2]]
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Revision as of 08:50, 11 October 2023

Crystal structure of Sulfolobus shibatae isopentenyl diphosphate isomerase in complex with oIPP.

PDB ID 3b04

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