6w16
From Proteopedia
(Difference between revisions)
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==Crystal structure of a human metapneumovirus monomeric fusion protein complexed with 458 Fab== | ==Crystal structure of a human metapneumovirus monomeric fusion protein complexed with 458 Fab== | ||
- | <StructureSection load='6w16' size='340' side='right'caption='[[6w16]]' scene=''> | + | <StructureSection load='6w16' size='340' side='right'caption='[[6w16]], [[Resolution|resolution]] 3.10Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6W16 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6W16 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6w16]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens], [https://en.wikipedia.org/wiki/Human_immunodeficiency_virus_1 Human immunodeficiency virus 1] and [https://en.wikipedia.org/wiki/Human_metapneumovirus Human metapneumovirus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6W16 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6W16 FirstGlance]. <br> |
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6w16 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6w16 OCA], [https://pdbe.org/6w16 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6w16 RCSB], [https://www.ebi.ac.uk/pdbsum/6w16 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6w16 ProSAT]</span></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.1Å</td></tr> |
+ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6w16 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6w16 OCA], [https://pdbe.org/6w16 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6w16 RCSB], [https://www.ebi.ac.uk/pdbsum/6w16 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6w16 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/M1E1E4_9HIV1 M1E1E4_9HIV1] [https://www.uniprot.org/uniprot/Q6W8S4_9MONO Q6W8S4_9MONO] | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Human metapneumovirus (hMPV) is a leading cause of viral respiratory infection in children, and can cause severe lower respiratory tract infection in infants, the elderly, and immunocompromised patients. However, there remain no licensed vaccines or specific treatments for hMPV infection. Although the hMPV fusion (F) protein is the sole target of neutralizing antibodies, the immunological properties of hMPV F remain poorly understood. To further define the humoral immune response to the hMPV F protein, we isolated two new human monoclonal antibodies (mAbs), MPV458 and MPV465. Both mAbs are neutralizing in vitro and were determined to target a unique antigenic site using competitive biolayer interferometry. We determined both MPV458 and MPV465 have higher affinity for monomeric hMPV F than trimeric hMPV F. MPV458 was co-crystallized with hMPV F, and the mAb primarily interacts with an alpha helix on the F2 region of the hMPV F protein. Surprisingly, the major epitope for MPV458 lies within the trimeric interface of the hMPV F protein, suggesting significant breathing of the hMPV F protein must occur for host immune recognition of the novel epitope. In addition, significant glycan interactions were observed with a somatically mutated light chain framework residue. The data presented identifies a novel epitope on the hMPV F protein for epitope-based vaccine design, and illustrates a new mechanism for human antibody neutralization of viral glycoproteins. | ||
+ | |||
+ | Antibody recognition of the Pneumovirus fusion protein trimer interface.,Huang J, Diaz D, Mousa JJ PLoS Pathog. 2020 Oct 9;16(10):e1008942. doi: 10.1371/journal.ppat.1008942. , eCollection 2020 Oct. PMID:33035266<ref>PMID:33035266</ref> | ||
+ | |||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 6w16" style="background-color:#fffaf0;"></div> | ||
==See Also== | ==See Also== | ||
*[[Antibody 3D structures|Antibody 3D structures]] | *[[Antibody 3D structures|Antibody 3D structures]] | ||
+ | == References == | ||
+ | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
+ | [[Category: Homo sapiens]] | ||
+ | [[Category: Human immunodeficiency virus 1]] | ||
+ | [[Category: Human metapneumovirus]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: Huang | + | [[Category: Huang J]] |
+ | [[Category: Mousa JJ]] |
Revision as of 14:14, 18 October 2023
Crystal structure of a human metapneumovirus monomeric fusion protein complexed with 458 Fab
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