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| <StructureSection load='6w47' size='340' side='right'caption='[[6w47]], [[Resolution|resolution]] 1.15Å' scene=''> | | <StructureSection load='6w47' size='340' side='right'caption='[[6w47]], [[Resolution|resolution]] 1.15Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[6w47]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6W47 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6W47 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6w47]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6W47 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6W47 FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.15Å</td></tr> |
- | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=GLZ:AMINO-ACETALDEHYDE'>GLZ</scene>, <scene name='pdbligand=HYP:4-HYDROXYPROLINE'>HYP</scene>, <scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene>, <scene name='pdbligand=SAR:SARCOSINE'>SAR</scene></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GLZ:AMINO-ACETALDEHYDE'>GLZ</scene>, <scene name='pdbligand=HYP:4-HYDROXYPROLINE'>HYP</scene>, <scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene>, <scene name='pdbligand=SAR:SARCOSINE'>SAR</scene></td></tr> |
| <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6w47 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6w47 OCA], [https://pdbe.org/6w47 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6w47 RCSB], [https://www.ebi.ac.uk/pdbsum/6w47 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6w47 ProSAT]</span></td></tr> | | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6w47 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6w47 OCA], [https://pdbe.org/6w47 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6w47 RCSB], [https://www.ebi.ac.uk/pdbsum/6w47 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6w47 ProSAT]</span></td></tr> |
| </table> | | </table> |
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| </StructureSection> | | </StructureSection> |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Chenoweth, D M]] | + | [[Category: Synthetic construct]] |
- | [[Category: Melton, S D]] | + | [[Category: Chenoweth DM]] |
- | [[Category: Biosynthetic protein]] | + | [[Category: Melton SD]] |
- | [[Category: Cmp]]
| + | |
- | [[Category: Collagen]]
| + | |
- | [[Category: Peptoid]]
| + | |
- | [[Category: Structural protein]]
| + | |
- | [[Category: Triple helix]]
| + | |
| Structural highlights
6w47 is a 3 chain structure with sequence from Synthetic construct. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
| Method: | X-ray diffraction, Resolution 1.15Å |
Ligands: | , , , , |
Resources: | FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT |
Publication Abstract from PubMed
The stability of the triple-helical structure of collagen is modulated by a delicate balance of effects including polypeptide backbone geometry, a buried hydrogen bond network, dispersive interfacial interactions, and subtle stereoelectronic effects. Although the different amino acid propensities for the Xaa and Yaa positions of collagen's repeating (Glycine-Xaa-Yaa) primary structure have been described, our understanding of the impact of incorporating aza-glycine (azGly) residues adjacent to varied Xaa and Yaa position residues has been limited to specific sequences. Here, we detail the impact of variation in the Xaa position adjacent to an azGly residue and compare these results to our study on the impact of the Yaa position. For the first time, we present a set of design rules for azGly-stabilized triple-helical collagen peptides, accounting for all canonical amino acids in the Xaa and Yaa positions adjacent to an azGly residue, and extend these rules using multiple azGly residues. To gain atomic level insight into these new rules we present two high-resolution crystal structures of collagen triple helices, with the first peptoid-containing collagen peptide structure. In conjunction with biophysical and computational data, we highlight the critical importance of preserving the triple helix geometry and protecting the hydrogen bonding network proximal to the azGly residue from solvent. Our results provide a set of design guidelines for azGly-stabilized triple-helical collagen peptides and fundamental insight into collagen structure and stability.
Rules for the design of aza-glycine stabilized triple-helical collagen peptides.,Melton SD, Brackhahn EAE, Orlin SJ, Jin P, Chenoweth DM Chem Sci. 2020 Jul 21;11(39):10638-10646. doi: 10.1039/d0sc03003a. PMID:34094319[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Melton SD, Brackhahn EAE, Orlin SJ, Jin P, Chenoweth DM. Rules for the design of aza-glycine stabilized triple-helical collagen peptides. Chem Sci. 2020 Jul 21;11(39):10638-10646. doi: 10.1039/d0sc03003a. PMID:34094319 doi:http://dx.doi.org/10.1039/d0sc03003a
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