6x1i
From Proteopedia
(Difference between revisions)
Line 1: | Line 1: | ||
- | ==== | + | ==Two-Component D3 Assembly Constructed by Fusing Symmetric Oligomers to Coiled Coils== |
- | <StructureSection load='6x1i' size='340' side='right'caption='[[6x1i]]' scene=''> | + | <StructureSection load='6x1i' size='340' side='right'caption='[[6x1i]], [[Resolution|resolution]] 4.32Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6x1i]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_fabrum_str._C58 Agrobacterium fabrum str. C58] and [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii_OT3 Pyrococcus horikoshii OT3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6X1I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6X1I FirstGlance]. <br> |
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6x1i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6x1i OCA], [https://pdbe.org/6x1i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6x1i RCSB], [https://www.ebi.ac.uk/pdbsum/6x1i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6x1i ProSAT]</span></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 4.32Å</td></tr> |
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6x1i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6x1i OCA], [https://pdbe.org/6x1i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6x1i RCSB], [https://www.ebi.ac.uk/pdbsum/6x1i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6x1i ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/O58404_PYRHO O58404_PYRHO] | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Protein molecules bring a rich functionality to the field of designed nanoscale architectures. High-symmetry protein cages are rapidly finding diverse applications in biomedicine, nanotechnology, and imaging, but methods for their reliable and predictable construction remain challenging. In this study we introduce an approach for designing protein assemblies that combines ideas and favorable elements adapted from recent work. Cubically symmetric cages can be created by combining two simpler symmetries, following recently established principles. Here, two different oligomeric protein components are brought together in a geometrically specific arrangement by their separate genetic fusion to individual components of a heterodimeric coiled-coil polypeptide motif of known structure. Fusions between components are made by continuous alpha-helices to limit flexibility. After a computational design, we tested 10 different protein cage constructions experimentally, two of which formed larger assemblies. One produced the intended octahedral cage, approximately 26 nm in diameter, while the other appeared to produce the intended tetrahedral cage as a minor component, crystallizing instead in an alternate form representing a collapsed structure of lower stoichiometry and symmetry. Geometric distinctions between the two characterized designs help explain the different degrees of success, leading to clearer principles and improved prospects for the routine creation of nanoscale protein architectures using diverse methods. | ||
+ | |||
+ | Geometric Lessons and Design Strategies for Nanoscale Protein Cages.,Laniado J, Cannon KA, Miller JE, Sawaya MR, McNamara DE, Yeates TO ACS Nano. 2021 Mar 23;15(3):4277-4286. doi: 10.1021/acsnano.0c07167. Epub 2021 , Mar 8. PMID:33683103<ref>PMID:33683103</ref> | ||
+ | |||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 6x1i" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
+ | [[Category: Agrobacterium fabrum str. C58]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: | + | [[Category: Pyrococcus horikoshii OT3]] |
+ | [[Category: Laniado J]] | ||
+ | [[Category: Sawaya MR]] | ||
+ | [[Category: Yeates TO]] |
Current revision
Two-Component D3 Assembly Constructed by Fusing Symmetric Oligomers to Coiled Coils
|