6xaz

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Current revision (14:49, 18 October 2023) (edit) (undo)
 
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<StructureSection load='6xaz' size='340' side='right'caption='[[6xaz]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
<StructureSection load='6xaz' size='340' side='right'caption='[[6xaz]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[6xaz]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6XAZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6XAZ FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6xaz]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6XAZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6XAZ FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PRDM5, PFM2 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6xaz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6xaz OCA], [https://pdbe.org/6xaz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6xaz RCSB], [https://www.ebi.ac.uk/pdbsum/6xaz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6xaz ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6xaz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6xaz OCA], [https://pdbe.org/6xaz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6xaz RCSB], [https://www.ebi.ac.uk/pdbsum/6xaz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6xaz ProSAT]</span></td></tr>
</table>
</table>
== Disease ==
== Disease ==
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[[https://www.uniprot.org/uniprot/PRDM5_HUMAN PRDM5_HUMAN]] Brittle cornea syndrome. The disease is caused by variants affecting the gene represented in this entry.
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[https://www.uniprot.org/uniprot/PRDM5_HUMAN PRDM5_HUMAN] Brittle cornea syndrome. The disease is caused by variants affecting the gene represented in this entry.
== Function ==
== Function ==
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[[https://www.uniprot.org/uniprot/PRDM5_HUMAN PRDM5_HUMAN]] Sequence-specific DNA-binding transcription factor. Represses transcription at least in part by recruitment of the histone methyltransferase EHMT2/G9A and histone deacetylases such as HDAC1. Regulates hematopoiesis-associated protein-coding and microRNA (miRNA) genes. May regulate the expression of proteins involved in extracellular matrix development and maintenance, including fibrillar collagens, such as COL4A1 and COL11A1, connective tissue components, such as HAPLN1, and molecules regulating cell migration and adhesion, including EDIL3 and TGFB2. May cause G2/M arrest and apoptosis in cancer cells.<ref>PMID:15077163</ref> <ref>PMID:17636019</ref> <ref>PMID:21664999</ref>
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[https://www.uniprot.org/uniprot/PRDM5_HUMAN PRDM5_HUMAN] Sequence-specific DNA-binding transcription factor. Represses transcription at least in part by recruitment of the histone methyltransferase EHMT2/G9A and histone deacetylases such as HDAC1. Regulates hematopoiesis-associated protein-coding and microRNA (miRNA) genes. May regulate the expression of proteins involved in extracellular matrix development and maintenance, including fibrillar collagens, such as COL4A1 and COL11A1, connective tissue components, such as HAPLN1, and molecules regulating cell migration and adhesion, including EDIL3 and TGFB2. May cause G2/M arrest and apoptosis in cancer cells.<ref>PMID:15077163</ref> <ref>PMID:17636019</ref> <ref>PMID:21664999</ref>
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Human]]
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[[Category: Homo sapiens]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Briknarova, K]]
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[[Category: Briknarova K]]
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[[Category: Kerchner, K M]]
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[[Category: Kerchner KM]]
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[[Category: Mou, T C]]
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[[Category: Mou TC]]
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[[Category: Sprang, S R]]
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[[Category: Sprang SR]]
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[[Category: Prdm5]]
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[[Category: Transcription]]
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[[Category: Transferase]]
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Current revision

Structure of the PR domain from human PRDM5

PDB ID 6xaz

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Proteopedia Page Contributors and Editors (what is this?)

OCA

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